Resource
| Id | DNase-seq/ENCSR000EIV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EIV [biosample_summary="Homo sapiens AG08395"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN390CJJ|/analyses/ENCAN390CJJ/} has in progress subobject document {5c093d49-972a-46b2-9bb4-b5c65ab0b407|/documents/5c093d49-972a-46b2-9bb4-b5c65ab0b407/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF556MAE|/files/ENCFF556MAE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIV | float |
DNase-seq_ENCSR000EIV |
DNase-seq ENCSR000EIV [biosample_summary="Homo sapiens AG08395"]
|
 |
[0.0388, 18.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31336524 | 0.97% | 169281 |
| chr1 | 2967376 | 1.19% | 15999 |
| chr2 | 2560122 | 1.06% | 13793 |
| chr3 | 2089996 | 1.05% | 11290 |
| chr4 | 1515751 | 0.80% | 8343 |
| chr5 | 1744452 | 0.96% | 9416 |
| chr6 | 1933600 | 1.13% | 10471 |
| chr7 | 1544265 | 0.97% | 8372 |
| chr8 | 1461065 | 1.01% | 7940 |
| chr9 | 1393075 | 1.01% | 7467 |
| chr10 | 1559450 | 1.17% | 8412 |
| chr11 | 1601606 | 1.19% | 8604 |
| chr12 | 1545825 | 1.16% | 8333 |
| chr13 | 818769 | 0.72% | 4441 |
| chr14 | 946036 | 0.88% | 5086 |
| chr15 | 1066319 | 1.05% | 5724 |
| chr16 | 991472 | 1.10% | 5323 |
| chr17 | 1330706 | 1.60% | 7139 |
| chr18 | 686133 | 0.85% | 3723 |
| chr19 | 1009761 | 1.72% | 5396 |
| chr20 | 848047 | 1.32% | 4557 |
| chr21 | 374511 | 0.80% | 2010 |
| chr22 | 580942 | 1.14% | 3131 |
| chrX | 766861 | 0.49% | 4308 |
| chrY | 384 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 169281 | 1 | 820 | 185.12 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF991GOM.bed.gz | 1.8 MB | eb4fc3b0472dd088aefa719da64ff043 |
| ENCFF991GOM.tabix.bed.gz | 1.65 MB | 988c877462a5c25e72619dc47925fc08 |
| ENCFF991GOM.tabix.bed.gz.tbi | 567.05 KB | a67cad88133204407986ff1e77721032 |
| genomic_resource.yaml | 2.13 KB | 03664af0d2f2eea224e5d009e7d43f2c |
| statistics/ |