DNase-seq_ENCSR000EIV
DNase-seq ENCSR000EIV [biosample_summary="Homo sapiens AG08395"]
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| Id: | DNase-seq/ENCSR000EIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIV [biosample_summary="Homo sapiens AG08395"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN390CJJ|/analyses/ENCAN390CJJ/} has in progress subobject document {5c093d49-972a-46b2-9bb4-b5c65ab0b407|/documents/5c093d49-972a-46b2-9bb4-b5c65ab0b407/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF556MAE|/files/ENCFF556MAE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIV | float |
DNase-seq_ENCSR000EIV |
DNase-seq ENCSR000EIV [biosample_summary="Homo sapiens AG08395"]
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[0.0388, 18.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991GOM.bed.gz | 1.8 MB | eb4fc3b0472dd088aefa719da64ff043 |
| ENCFF991GOM.bed.gz.dvc | 101.0 B | 084ed26eb65253658bf24e8f4835e4ee |
| ENCFF991GOM.tabix.bed.gz | 1.65 MB | 988c877462a5c25e72619dc47925fc08 |
| ENCFF991GOM.tabix.bed.gz.dvc | 107.0 B | 35fda02d0c5e2352b533c41b0e8fe83c |
| ENCFF991GOM.tabix.bed.gz.tbi | 567.05 KB | a67cad88133204407986ff1e77721032 |
| ENCFF991GOM.tabix.bed.gz.tbi.dvc | 110.0 B | 7bdbab86b819b9742ba7330373784e3a |
| genomic_resource.yaml | 2.13 KB | 03664af0d2f2eea224e5d009e7d43f2c |
| genomic_resource_original.yaml | 2.06 KB | 2ff3fe6eb1cc889e068eaf6b3ab3d718 |
| statistics/ |