DNase-seq_ENCSR000EIS
DNase-seq ENCSR000EIS [biosample_summary="Homo sapiens GM03348"]
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| Id: | DNase-seq/ENCSR000EIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIS [biosample_summary="Homo sapiens GM03348"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN512YZL|/analyses/ENCAN512YZL/} has in progress subobject document {62a05412-799a-4a9d-bbb0-83c3ad0193f6|/documents/62a05412-799a-4a9d-bbb0-83c3ad0193f6/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF145STU|/files/ENCFF145STU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIS | float |
DNase-seq_ENCSR000EIS |
DNase-seq ENCSR000EIS [biosample_summary="Homo sapiens GM03348"]
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|
[0.0331, 25] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292OFY.bed.gz | 2.02 MB | 746d770d4f5a9899d86e1881051f1784 |
| ENCFF292OFY.bed.gz.dvc | 101.0 B | b346fdd0abd4d41e65d196ab366ac9eb |
| ENCFF292OFY.tabix.bed.gz | 1.86 MB | 9a8ec66e7970d04b9dcc8e183b6c2789 |
| ENCFF292OFY.tabix.bed.gz.dvc | 107.0 B | 68c7b1aa51ce0b562a03fbab0cace57f |
| ENCFF292OFY.tabix.bed.gz.tbi | 587.02 KB | c6e0a0656c8680213f23843b6ca61081 |
| ENCFF292OFY.tabix.bed.gz.tbi.dvc | 110.0 B | efed9a47c389d6bd64a8bc3a69f4d17a |
| genomic_resource.yaml | 2.13 KB | 9ac347d0ebd489125ab33824e9219fb3 |
| genomic_resource_original.yaml | 2.06 KB | 94655b3bf98c496836cd5d8cb71ce142 |
| statistics/ |