DNase-seq_ENCSR000EIR
DNase-seq ENCSR000EIR [biosample_summary="Homo sapiens GM03348 genetically modified (insertion) using transduction targeting H. sapiens MYOD1"]
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| Id: | DNase-seq/ENCSR000EIR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIR [biosample_summary="Homo sapiens GM03348 genetically modified (insertion) using transduction targeting H. sapiens MYOD1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: genetically modified (insertion) using transduction targeting H. sapiens MYOD1 output_type: peaks audit_internal_action: Released analysis {ENCAN288CIU|/analyses/ENCAN288CIU/} has in progress subobject document {73c35abd-510b-4781-a547-daefb0ea5a40|/documents/73c35abd-510b-4781-a547-daefb0ea5a40/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF337NRJ|/files/ENCFF337NRJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIR | float |
DNase-seq_ENCSR000EIR |
DNase-seq ENCSR000EIR [biosample_summary="Homo sapiens GM03348 genetically modified (insertion) using transduction targeting H. sapiens MYOD1"]
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[0.0271, 28.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF900SLD.bed.gz | 1.79 MB | 6b39a2d20adfe71c2b07939e741407b2 |
| ENCFF900SLD.bed.gz.dvc | 101.0 B | 91f365372a3870788ad3696f3c6d9c29 |
| ENCFF900SLD.tabix.bed.gz | 1.64 MB | 26f7eec78b512c6747e1dc2f84366f0c |
| ENCFF900SLD.tabix.bed.gz.dvc | 107.0 B | f77d21d0c875fc1445e7a09b3a031ce2 |
| ENCFF900SLD.tabix.bed.gz.tbi | 546.24 KB | 1842a2452cf070e9bec46ffb8ee00655 |
| ENCFF900SLD.tabix.bed.gz.tbi.dvc | 110.0 B | 4b6c720b54cc35c24973bc85fbc74e5d |
| genomic_resource.yaml | 2.54 KB | ce8b3358e2470e01418eb3d758d368e4 |
| genomic_resource_original.yaml | 2.39 KB | a2e97233fa7898f747524ca128f7339f |
| statistics/ |