DNase-seq_ENCSR000EIN
DNase-seq ENCSR000EIN [biosample_summary="Homo sapiens COLO829"]
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| Id: | DNase-seq/ENCSR000EIN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIN [biosample_summary="Homo sapiens COLO829"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN323PJD|/analyses/ENCAN323PJD/} has in progress subobject document {0a28abd2-e8e1-4ba6-aaa5-1657df948771|/documents/0a28abd2-e8e1-4ba6-aaa5-1657df948771/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF570YYW|/files/ENCFF570YYW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIN | float |
DNase-seq_ENCSR000EIN |
DNase-seq ENCSR000EIN [biosample_summary="Homo sapiens COLO829"]
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[0.0514, 13.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF199VFY.bed.gz | 1.18 MB | 95f544714b136e7848443fd89284c743 |
| ENCFF199VFY.bed.gz.dvc | 101.0 B | c2a24e387018dba1ad4f92455fb9ac75 |
| ENCFF199VFY.tabix.bed.gz | 1.07 MB | 86bd4d496ddd384ece56e0a600660257 |
| ENCFF199VFY.tabix.bed.gz.dvc | 107.0 B | 9b95d1aeb93a19baf4fe57bfa2a8841b |
| ENCFF199VFY.tabix.bed.gz.tbi | 512.32 KB | 4e4436b665bf4961772416f6f07e4785 |
| ENCFF199VFY.tabix.bed.gz.tbi.dvc | 110.0 B | ffe4c7737a81952aa320b16daf3b09e5 |
| genomic_resource.yaml | 2.13 KB | 79d0b6f06291d538c431df1e25baf478 |
| genomic_resource_original.yaml | 2.06 KB | f9dd82630dcbe88cdab09f722b2cccd3 |
| statistics/ |