DNase-seq_ENCSR000EIL
DNase-seq ENCSR000EIL [biosample_summary="Homo sapiens chorion tissue"]
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| Id: | DNase-seq/ENCSR000EIL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIL [biosample_summary="Homo sapiens chorion tissue"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Released analysis {ENCAN204BKY|/analyses/ENCAN204BKY/} has in progress subobject document {a46eb7a6-3bfb-4bcb-b1ef-c6c1006ff83c|/documents/a46eb7a6-3bfb-4bcb-b1ef-c6c1006ff83c/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984FGZ|/files/ENCFF984FGZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIL | float |
DNase-seq_ENCSR000EIL |
DNase-seq ENCSR000EIL [biosample_summary="Homo sapiens chorion tissue"]
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[0.0893, 21.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF517FIV.bed.gz | 649.97 KB | 0990ddf0ebf2173febbf06b2dece6c5f |
| ENCFF517FIV.bed.gz.dvc | 100.0 B | a20a274f6e4a1a6ee263295f504636f3 |
| ENCFF517FIV.tabix.bed.gz | 600.55 KB | 682bdc6bb1c3e1b4be46f7666d3f283f |
| ENCFF517FIV.tabix.bed.gz.dvc | 106.0 B | 0a059f8ec104f5fc9f138cab911d8e47 |
| ENCFF517FIV.tabix.bed.gz.tbi | 221.54 KB | f47a1437a288120d6650c1f94f164f20 |
| ENCFF517FIV.tabix.bed.gz.tbi.dvc | 110.0 B | 6e30c0fb833bb0398f0bce8c41fb3f6f |
| genomic_resource.yaml | 2.15 KB | d98af292a08e80d748251dcb641d330e |
| genomic_resource_original.yaml | 2.07 KB | 8f35159d26a33b7c114377fe8e235d91 |
| statistics/ |