DNase-seq_ENCSR000EIK
DNase-seq ENCSR000EIK [biosample_summary="Homo sapiens frontal cortex tissue male adult (27 years) and male adult (35 years)"]
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| Id: | DNase-seq/ENCSR000EIK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIK [biosample_summary="Homo sapiens frontal cortex tissue male adult (27 years) and male adult (35 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN379KID|/analyses/ENCAN379KID/} has in progress subobject document {5ba1a2cd-7836-49d6-802c-dda409dbd6cc|/documents/5ba1a2cd-7836-49d6-802c-dda409dbd6cc/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF939YKY|/files/ENCFF939YKY/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF846MVS|/files/ENCFF846MVS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIK | float |
DNase-seq_ENCSR000EIK |
DNase-seq ENCSR000EIK [biosample_summary="Homo sapiens frontal cortex tissue male adult (27 years) and male adult (35 years)"]
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[0.07, 22.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF400QKK.bed.gz | 795.34 KB | 1241201168910a69d39fe052f53f56fe |
| ENCFF400QKK.bed.gz.dvc | 100.0 B | 62915c24f7413766e5ec45b80d23cef7 |
| ENCFF400QKK.tabix.bed.gz | 726.16 KB | d4cb2862939a7da9b18df15d819f461e |
| ENCFF400QKK.tabix.bed.gz.dvc | 106.0 B | 0471e214083ad65722afa3470606c182 |
| ENCFF400QKK.tabix.bed.gz.tbi | 324.02 KB | 39803633a1a8e01d985c422b8e5ede53 |
| ENCFF400QKK.tabix.bed.gz.tbi.dvc | 110.0 B | dd60da2c8d99df43319f879624b910dc |
| genomic_resource.yaml | 3.18 KB | 8ca1e25516f2742dbba6f537d729e7a9 |
| genomic_resource_original.yaml | 3.06 KB | c751e436850791071563a09f1fce6710 |
| statistics/ |