DNase-seq_ENCSR000EIJ
DNase-seq ENCSR000EIJ [biosample_summary="Homo sapiens cerebellum tissue male adult (27 years) and male adult (35 years)"]
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| Id: | DNase-seq/ENCSR000EIJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIJ [biosample_summary="Homo sapiens cerebellum tissue male adult (27 years) and male adult (35 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN215ESR|/analyses/ENCAN215ESR/} has in progress subobject document {55959ab2-3b02-44bb-9971-096824d98519|/documents/55959ab2-3b02-44bb-9971-096824d98519/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF379EFG|/files/ENCFF379EFG/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF884JDV|/files/ENCFF884JDV/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIJ | float |
DNase-seq_ENCSR000EIJ |
DNase-seq ENCSR000EIJ [biosample_summary="Homo sapiens cerebellum tissue male adult (27 years) and male adult (35 years)"]
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[0.0478, 20] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF109NJY.bed.gz | 1.11 MB | 6bf22bdc67ffe61ed7e1fa8c77afefa8 |
| ENCFF109NJY.bed.gz.dvc | 101.0 B | 7338e5360dd9dcab20338e29a357fcaf |
| ENCFF109NJY.tabix.bed.gz | 1.02 MB | 78dd8a43466222003336d6549670a85b |
| ENCFF109NJY.tabix.bed.gz.dvc | 107.0 B | cb9890a3ed6cfe208d3a1cbb94a45f49 |
| ENCFF109NJY.tabix.bed.gz.tbi | 411.71 KB | 3ad337ae2e19268bd1be2ac250bef920 |
| ENCFF109NJY.tabix.bed.gz.tbi.dvc | 110.0 B | b6c8334d2ca40eef2822a1d89b2ba921 |
| genomic_resource.yaml | 3.17 KB | 510fbf3ea2b283dd0972ea6847683026 |
| genomic_resource_original.yaml | 3.05 KB | f2765e700c334c067fb8b129876d7594 |
| statistics/ |