DNase-seq_ENCSR000EII
DNase-seq ENCSR000EII [biosample_summary="Homo sapiens B cell female adult (27 years)"]
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| Id: | DNase-seq/ENCSR000EII |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EII [biosample_summary="Homo sapiens B cell female adult (27 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN566YOQ|/analyses/ENCAN566YOQ/} has in progress subobject document {97a3bbbc-a1a7-48f6-825f-6cff19b4839c|/documents/97a3bbbc-a1a7-48f6-825f-6cff19b4839c/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF117XBT|/files/ENCFF117XBT/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EII | float |
DNase-seq_ENCSR000EII |
DNase-seq ENCSR000EII [biosample_summary="Homo sapiens B cell female adult (27 years)"]
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[0.0478, 66.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF938ICV.bed.gz | 1003.35 KB | 7138763caaca99a051907c44cdf6a80c |
| ENCFF938ICV.bed.gz.dvc | 101.0 B | 2efb16f06d251aa9db73b7ce731fea44 |
| ENCFF938ICV.tabix.bed.gz | 934.79 KB | 44f8b25ef2a72088f52fb57e2c7a13c1 |
| ENCFF938ICV.tabix.bed.gz.dvc | 106.0 B | 5e6c60a0610245c5f0c091e30f110c2f |
| ENCFF938ICV.tabix.bed.gz.tbi | 283.47 KB | c0d22c371731a2a8f5cf56f70c80e0cf |
| ENCFF938ICV.tabix.bed.gz.tbi.dvc | 110.0 B | 6e95b4cfe72b58b7040b9ef12718519e |
| genomic_resource.yaml | 2.25 KB | f9955e016ecb50fbd930bdf79ebef337 |
| genomic_resource_original.yaml | 2.16 KB | 4bff3ac720a8a271391bdbd9bb8a9146 |
| statistics/ |