Resource

Id DNase-seq/ENCSR000EIIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EII [biosample_summary="Homo sapiens B cell female adult (27 years)"]
Description
Labels
  • accession: ENCSR000EII
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000236/
  • biosample_summary: Homo sapiens B cell female adult (27 years)
  • date_created: 2014-01-30T18:56:44.373426+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EII
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (27 years)
  • status: released
  • submitter_comment: The data quality is too poor for processing.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EII float

DNase-seq_ENCSR000EII
DNase-seq ENCSR000EII [biosample_summary="Homo sapiens B cell female adult (27 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR000EII [0.0478, 66.2]
n
17,723,616
mean
2.22
sd
3.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 177236160.55% 93514
chr1 1542961 0.62% 8059
chr2 1178560 0.49% 6270
chr3 830698 0.42% 4451
chr4 635312 0.33% 3292
chr5 764015 0.42% 4058
chr6 866233 0.51% 4653
chr7 905327 0.57% 4823
chr8 708751 0.49% 3716
chr9 799651 0.58% 4271
chr10 740301 0.55% 3967
chr11 999472 0.74% 5211
chr12 823594 0.62% 4403
chr13 303095 0.27% 1629
chr14 594783 0.56% 3173
chr15 549801 0.54% 2960
chr16 758053 0.84% 3986
chr17 1083740 1.30% 5765
chr18 268085 0.33% 1400
chr19 1611800 2.75% 8205
chr20 539950 0.84% 2830
chr21 217301 0.47% 1129
chr22 551343 1.08% 2898
chrX 450480 0.29% 2363
chrY 310 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93514 1 1060 189.53 180
global segment-length histogram

Files

Filename Size md5
ENCFF938ICV.bed.gz 1003.35 KB 7138763caaca99a051907c44cdf6a80c
ENCFF938ICV.tabix.bed.gz 934.79 KB 44f8b25ef2a72088f52fb57e2c7a13c1
ENCFF938ICV.tabix.bed.gz.tbi 283.47 KB c0d22c371731a2a8f5cf56f70c80e0cf
genomic_resource.yaml 2.25 KB f9955e016ecb50fbd930bdf79ebef337
statistics/