DNase-seq_ENCSR000EIG
DNase-seq ENCSR000EIG [biosample_summary="Homo sapiens T-helper 1 cell"]
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| Id: | DNase-seq/ENCSR000EIG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIG [biosample_summary="Homo sapiens T-helper 1 cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: mixed sex output_type: peaks audit_internal_action: Released analysis {ENCAN851RBF|/analyses/ENCAN851RBF/} has in progress subobject document {407a8056-be9f-49f1-ac32-5a5694b939c0|/documents/407a8056-be9f-49f1-ac32-5a5694b939c0/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF029NSD|/files/ENCFF029NSD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIG | float |
DNase-seq_ENCSR000EIG |
DNase-seq ENCSR000EIG [biosample_summary="Homo sapiens T-helper 1 cell"]
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[0.0948, 40.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF406MTD.bed.gz | 1.03 MB | 077536e409df075ef77691527be9a7fc |
| ENCFF406MTD.bed.gz.dvc | 101.0 B | 78c159d3fb8f23b588fd24cee8e1f40e |
| ENCFF406MTD.tabix.bed.gz | 960.56 KB | f254a97e6e1cdffea7f54c6738330fde |
| ENCFF406MTD.tabix.bed.gz.dvc | 106.0 B | e737232a3b09aba23f50278ea68ffb9c |
| ENCFF406MTD.tabix.bed.gz.tbi | 270.04 KB | abf626d229befac9053c8d761fa488de |
| ENCFF406MTD.tabix.bed.gz.tbi.dvc | 110.0 B | 55516823bee8ea20ef5be1406c720b9f |
| genomic_resource.yaml | 2.14 KB | 4d3b0e6b64f3c89894ed878af8d9f434 |
| genomic_resource_original.yaml | 2.06 KB | f402b7b3abfadb05b284065b602e41d1 |
| statistics/ |