DNase-seq_ENCSR000EIF
DNase-seq ENCSR000EIF [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
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| Id: | DNase-seq/ENCSR000EIF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EIF [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: mixed sex output_type: peaks audit_internal_action: Released analysis {ENCAN080PFW|/analyses/ENCAN080PFW/} has in progress subobject document {e718d5bd-8aac-44d3-befe-dcfba3140fdc|/documents/e718d5bd-8aac-44d3-befe-dcfba3140fdc/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF151OJF|/files/ENCFF151OJF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIF | float |
DNase-seq_ENCSR000EIF |
DNase-seq ENCSR000EIF [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell"]
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[0.0714, 42.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF158VBA.bed.gz | 647.51 KB | 29151a178e3969c2ba19c20f4c97c31b |
| ENCFF158VBA.bed.gz.dvc | 100.0 B | 0d3dafbfe63790d5d212f2b241054b64 |
| ENCFF158VBA.tabix.bed.gz | 589.37 KB | 785ecd496dcffc40c017ef53ef1be314 |
| ENCFF158VBA.tabix.bed.gz.dvc | 106.0 B | ab76fe1b8d5eae33083d3901159b1d1c |
| ENCFF158VBA.tabix.bed.gz.tbi | 256.79 KB | 33aa2923c9192bd9ff4964de301ec670 |
| ENCFF158VBA.tabix.bed.gz.tbi.dvc | 110.0 B | 981f64f6d863ee3c37e87c94e381dfa6 |
| genomic_resource.yaml | 2.25 KB | a139c3b934494c283d500d14357d7eef |
| genomic_resource_original.yaml | 2.14 KB | b32af9ca1c480b95d75da950a116a58b |
| statistics/ |