Resource

Id DNase-seq/ENCSR000EIEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EIE [biosample_summary="Homo sapiens A549"]
Description
Labels
  • accession: ENCSR000EIE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2013-12-12T07:07:10.375672+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EIE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EIE float

DNase-seq_ENCSR000EIE
DNase-seq ENCSR000EIE [biosample_summary="Homo sapiens A549"]
 HISTOGRAM FOR DNase-seq_ENCSR000EIE [4, 2.41e+03]
n
22,470,183
mean
93.3
sd
96.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224701830.70% 149374
chr1 1853344 0.74% 12324
chr2 1481872 0.61% 9858
chr3 1102866 0.56% 7334
chr4 790459 0.42% 5257
chr5 1029101 0.57% 6846
chr6 1009556 0.59% 6728
chr7 1090801 0.68% 7255
chr8 962153 0.66% 6399
chr9 954514 0.69% 6342
chr10 999997 0.75% 6654
chr11 1154730 0.85% 7675
chr12 1248485 0.94% 8296
chr13 373939 0.33% 2487
chr14 659277 0.62% 4385
chr15 785558 0.77% 5229
chr16 996103 1.10% 6605
chr17 2100306 2.52% 13943
chr18 349778 0.44% 2330
chr19 1732563 2.96% 11483
chr20 691066 1.07% 4595
chr21 184381 0.39% 1230
chr22 363128 0.71% 2419
chrX 537306 0.34% 3574
chrY 18900 0.03% 126
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 149374 7 452 150.43 150
global segment-length histogram

Files

Filename Size md5
ENCFF491QVY.bed.gz 1.4 MB bfdf36f82e322fa203648fda2e64d459
ENCFF491QVY.tabix.bed.gz 1.2 MB fcf5b08226eb0502bf290ef65980270f
ENCFF491QVY.tabix.bed.gz.tbi 446.17 KB 6c80754df7f84d6528dac9c1fdb6ba5d
genomic_resource.yaml 1.25 KB f8d42727f3be0a0adfc8159e30bba973
statistics/