Resource

Id DNase-seq/ENCSR000EIDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EID [biosample_summary="Homo sapiens 8988T"]
Description
Labels
  • accession: ENCSR000EID
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005713/
  • biosample_summary: Homo sapiens 8988T
  • date_created: 2013-12-12T07:07:09.751532+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EID
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EID float

DNase-seq_ENCSR000EID

DNase-seq ENCSR000EID [biosample_summary="Homo sapiens 8988T"]
HISTOGRAM FOR DNase-seq_ENCSR000EID [0.101, 26.4]
n
11,339,610
mean
2.21
sd
1.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 113396100.35% 63197
chr1 917875 0.37% 5172
chr2 831207 0.34% 4655
chr3 700728 0.35% 3927
chr4 410016 0.22% 2283
chr5 626196 0.34% 3426
chr6 576129 0.34% 3253
chr7 441767 0.28% 2500
chr8 526141 0.36% 2908
chr9 549188 0.40% 3061
chr10 529362 0.40% 2965
chr11 908245 0.67% 4909
chr12 511927 0.38% 2876
chr13 193071 0.17% 1091
chr14 371343 0.35% 2053
chr15 265473 0.26% 1530
chr16 535009 0.59% 2949
chr17 591855 0.71% 3276
chr18 164421 0.20% 926
chr19 727354 1.24% 3939
chr20 404082 0.63% 2259
chr21 101087 0.22% 590
chr22 243966 0.48% 1388
chrX 212949 0.14% 1259
chrY 219 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63197 2 820 179.43 178
global segment-length histogram

Files

Filename Size md5
ENCFF533SUL.bed.gz 672.85 KB 9758abf129141a6eec83667e60ed00b7
ENCFF533SUL.tabix.bed.gz 614.81 KB 6b4b21f8d836054c35cd65650f8fe92e
ENCFF533SUL.tabix.bed.gz.tbi 247.57 KB 02c4fdbcc778ac72fb5d375d46b64d88
genomic_resource.yaml 1.28 KB 2c55bda8eeea8bcd8fd583d1be0af7ce
statistics/