Resource
| Id | ATAC-seq/ENCSR996ZCR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR996ZCR [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN640RMZ|/analyses/ENCAN640RMZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN640RMZ|/analyses/ENCAN640RMZ/} has in progress subobject document {e48ca538-77a2-47e4-b306-3793106b878a|/documents/e48ca538-77a2-47e4-b306-3793106b878a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF454SNX|/files/ENCFF454SNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881651. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF454SNX|/files/ENCFF454SNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR996ZCR | float |
ATAC-seq_ENCSR996ZCR |
ATAC-seq ENCSR996ZCR [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"]
|
 |
[1.36, 39.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 88599871 | 2.75% | 149661 |
| chr1 | 8280570 | 3.33% | 13828 |
| chr2 | 6953365 | 2.87% | 12090 |
| chr3 | 5426807 | 2.74% | 9657 |
| chr4 | 3845820 | 2.02% | 6942 |
| chr5 | 4371874 | 2.41% | 7748 |
| chr6 | 4927747 | 2.88% | 8647 |
| chr7 | 4621379 | 2.90% | 7856 |
| chr8 | 3693576 | 2.54% | 6399 |
| chr9 | 3890655 | 2.81% | 6535 |
| chr10 | 4378532 | 3.27% | 7531 |
| chr11 | 4579546 | 3.39% | 7619 |
| chr12 | 4078665 | 3.06% | 6935 |
| chr13 | 2110304 | 1.85% | 3794 |
| chr14 | 2829496 | 2.64% | 4746 |
| chr15 | 3074375 | 3.01% | 5199 |
| chr16 | 3291619 | 3.64% | 5204 |
| chr17 | 4372322 | 5.25% | 6754 |
| chr18 | 1930030 | 2.40% | 3494 |
| chr19 | 3666745 | 6.26% | 5125 |
| chr20 | 2464691 | 3.82% | 4154 |
| chr21 | 1255193 | 2.69% | 2043 |
| chr22 | 2182294 | 4.29% | 3423 |
| chrX | 2372887 | 1.52% | 3932 |
| chrY | 1379 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 149661 | 150 | 4365 | 592 | 463 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF380AEO.bed.gz | 5.74 MB | 94e0005bbf2a17d5d8b2f8940fa57f37 |
| ENCFF380AEO.tabix.bed.gz | 1.63 MB | 37c2265f07d772a98c16e9e72c50d30b |
| ENCFF380AEO.tabix.bed.gz.tbi | 505.64 KB | d74b76a39f285071f43c255a46c3f7a1 |
| genomic_resource.yaml | 2.77 KB | c777c40ea15ccd4fc3c31d929a6c87c7 |
| statistics/ |