ATAC-seq_ENCSR996ZCR
ATAC-seq ENCSR996ZCR [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"]
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| Id: | ATAC-seq/ENCSR996ZCR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR996ZCR [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN640RMZ|/analyses/ENCAN640RMZ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN640RMZ|/analyses/ENCAN640RMZ/} has in progress subobject document {e48ca538-77a2-47e4-b306-3793106b878a|/documents/e48ca538-77a2-47e4-b306-3793106b878a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF454SNX|/files/ENCFF454SNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881651. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF454SNX|/files/ENCFF454SNX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR996ZCR | float |
ATAC-seq_ENCSR996ZCR |
ATAC-seq ENCSR996ZCR [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"]
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[1.36, 39.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF380AEO.bed.gz | 5.74 MB | 94e0005bbf2a17d5d8b2f8940fa57f37 |
| ENCFF380AEO.bed.gz.dvc | 101.0 B | 76f73798281e5fc73e7d597bf827e427 |
| ENCFF380AEO.tabix.bed.gz | 1.63 MB | 37c2265f07d772a98c16e9e72c50d30b |
| ENCFF380AEO.tabix.bed.gz.dvc | 107.0 B | aa3195e8b295799db62df784a32b62b8 |
| ENCFF380AEO.tabix.bed.gz.tbi | 505.64 KB | d74b76a39f285071f43c255a46c3f7a1 |
| ENCFF380AEO.tabix.bed.gz.tbi.dvc | 110.0 B | 6f1cdc4a3137e6594f9bd7cf4aad877a |
| genomic_resource.yaml | 2.77 KB | c777c40ea15ccd4fc3c31d929a6c87c7 |
| genomic_resource_original.yaml | 2.67 KB | ee68eb81bbe7f38513082bad17e7f8f5 |
| statistics/ |