Resource

Id ATAC-seq/ENCSR993XEDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR993XED [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR993XED
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2021-01-22T21:06:38.695938+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR993XED
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR993XED float

ATAC-seq_ENCSR993XED
ATAC-seq ENCSR993XED [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR993XED [1.34, 38.2]
n
47,527,925
mean
8.26
sd
4.42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475279251.48% 81906
chr1 4669728 1.88% 7926
chr2 3760281 1.55% 6667
chr3 2863434 1.44% 5048
chr4 1850428 0.97% 3248
chr5 2293679 1.26% 4099
chr6 2899863 1.70% 5065
chr7 2371560 1.49% 4110
chr8 1971615 1.36% 3511
chr9 1881073 1.36% 3255
chr10 2282248 1.71% 4004
chr11 2313891 1.71% 3932
chr12 2344000 1.76% 3990
chr13 1140205 1.00% 2045
chr14 1643480 1.54% 2846
chr15 1568438 1.54% 2753
chr16 1735683 1.92% 2824
chr17 2486258 2.99% 4043
chr18 853669 1.06% 1551
chr19 2175271 3.71% 3444
chr20 1284022 1.99% 2219
chr21 656715 1.41% 1149
chr22 1058892 2.08% 1735
chrX 1332853 0.85% 2268
chrY 90639 0.16% 174
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81906 150 2754 580.27 474
global segment-length histogram

Files

Filename Size md5
ENCFF025DBX.bed.gz 3.31 MB b76835eac2758ae881f9dc5037934a4c
ENCFF025DBX.tabix.bed.gz 923.02 KB 81738ca9548aab9b45fcf862dcfe3eee
ENCFF025DBX.tabix.bed.gz.tbi 358.99 KB 4b2fd0e59c436de1134c65ea2495df6b
genomic_resource.yaml 1.89 KB 6987e0eefd01c842fe75749de1887f79
statistics/