| Id: | ATAC-seq/ENCSR991PBP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR991PBP [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN257GEQ|/analyses/ENCAN257GEQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF818AXT|/files/ENCFF818AXT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.742488. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF818AXT|/files/ENCFF818AXT/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.76. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR991PBP | float |
ATAC-seq_ENCSR991PBP |
ATAC-seq ENCSR991PBP [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
|
 |
[1.35, 40.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF418SHH.bed.gz | 4.32 MB | 6fe98a4b18fd17aaf049b790c0f13db1 |
| ENCFF418SHH.bed.gz.dvc | 101.0 B | 02527540dc3a9d80e0806770a13263b4 |
| ENCFF418SHH.tabix.bed.gz | 1.24 MB | 88f37cc84cf342f6776675fed943b0bf |
| ENCFF418SHH.tabix.bed.gz.dvc | 107.0 B | 2891dfd9e234a6b1dff156274686f8f3 |
| ENCFF418SHH.tabix.bed.gz.tbi | 426.58 KB | 843de6701f69aaac00c3ddc271b7a1b3 |
| ENCFF418SHH.tabix.bed.gz.tbi.dvc | 110.0 B | 1fb0e943f57410c71894aa23d867705b |
| genomic_resource.yaml | 2.95 KB | f9d3a8c59a843765175e45ddbfdf49d5 |
| genomic_resource_original.yaml | 2.78 KB | 2059b2658f261194dd248174e5e29b8c |
| statistics/ |