ATAC-seq_ENCSR990NNX
ATAC-seq ENCSR990NNX [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)"]
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| Id: | ATAC-seq/ENCSR990NNX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR990NNX [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN129GXH|/analyses/ENCAN129GXH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF756HAV|/files/ENCFF756HAV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.807474. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF756HAV|/files/ENCFF756HAV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR990NNX | float |
ATAC-seq_ENCSR990NNX |
ATAC-seq ENCSR990NNX [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)"]
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[1.27, 37.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF906HOT.bed.gz | 6.07 MB | 5d712418c1a1a657bd450a4f3080ad9e |
| ENCFF906HOT.bed.gz.dvc | 101.0 B | a9a38651f4d5a1d2aa0d75a4de6c20b3 |
| ENCFF906HOT.tabix.bed.gz | 1.92 MB | 1004659ec6b0b7e642159599b3af7fea |
| ENCFF906HOT.tabix.bed.gz.dvc | 107.0 B | 76fc7e02e23027de0cde073811462e51 |
| ENCFF906HOT.tabix.bed.gz.tbi | 563.52 KB | 1073b3ecb905b88ec084377643f3eb66 |
| ENCFF906HOT.tabix.bed.gz.tbi.dvc | 110.0 B | 2913aed417c6f9af997ad8ab6654158d |
| genomic_resource.yaml | 2.61 KB | 0874c88e62f645c83604dce4e077618e |
| genomic_resource_original.yaml | 2.5 KB | e122a66da2c2e4037a7ce695e42bdbfe |
| statistics/ |