Resource
| Id | ATAC-seq/ENCSR990NNX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR990NNX [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN129GXH|/analyses/ENCAN129GXH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF756HAV|/files/ENCFF756HAV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.807474. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF756HAV|/files/ENCFF756HAV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR990NNX | float |
ATAC-seq_ENCSR990NNX |
ATAC-seq ENCSR990NNX [biosample_summary="Homo sapiens upper lobe of right lung tissue male adult (60 years)"]
|
 |
[1.27, 37.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 101363332 | 3.15% | 177189 |
| chr1 | 9421406 | 3.78% | 16525 |
| chr2 | 8330186 | 3.44% | 14767 |
| chr3 | 6223341 | 3.14% | 11385 |
| chr4 | 4488675 | 2.36% | 8128 |
| chr5 | 5265527 | 2.90% | 9460 |
| chr6 | 5786188 | 3.39% | 10488 |
| chr7 | 5418899 | 3.40% | 9317 |
| chr8 | 4381622 | 3.02% | 7810 |
| chr9 | 4373824 | 3.16% | 7575 |
| chr10 | 5217898 | 3.90% | 9236 |
| chr11 | 5179102 | 3.83% | 8823 |
| chr12 | 4645262 | 3.49% | 8327 |
| chr13 | 2717531 | 2.38% | 4825 |
| chr14 | 3305647 | 3.09% | 5719 |
| chr15 | 3513816 | 3.45% | 6151 |
| chr16 | 3683861 | 4.08% | 6118 |
| chr17 | 4756433 | 5.71% | 7788 |
| chr18 | 2387541 | 2.97% | 4299 |
| chr19 | 3813967 | 6.51% | 5808 |
| chr20 | 2757773 | 4.28% | 4748 |
| chr21 | 1459086 | 3.12% | 2443 |
| chr22 | 2305986 | 4.54% | 3666 |
| chrX | 1832167 | 1.17% | 3543 |
| chrY | 97594 | 0.17% | 240 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 177189 | 150 | 4369 | 572.06 | 459 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF906HOT.bed.gz | 6.07 MB | 5d712418c1a1a657bd450a4f3080ad9e |
| ENCFF906HOT.tabix.bed.gz | 1.92 MB | 1004659ec6b0b7e642159599b3af7fea |
| ENCFF906HOT.tabix.bed.gz.tbi | 563.52 KB | 1073b3ecb905b88ec084377643f3eb66 |
| genomic_resource.yaml | 2.61 KB | 0874c88e62f645c83604dce4e077618e |
| statistics/ |