Resource
| Id | ATAC-seq/ENCSR983HXF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR983HXF [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN325KAH|/analyses/ENCAN325KAH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF980SRE|/files/ENCFF980SRE/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23566637 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF980SRE|/files/ENCFF980SRE/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.864714. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR983HXF | float |
ATAC-seq_ENCSR983HXF |
ATAC-seq ENCSR983HXF [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]
|
 |
[1.38, 40.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41853448 | 1.30% | 70381 |
| chr1 | 4189428 | 1.68% | 6977 |
| chr2 | 3258209 | 1.35% | 5622 |
| chr3 | 2492665 | 1.26% | 4289 |
| chr4 | 1613259 | 0.85% | 2738 |
| chr5 | 1935478 | 1.07% | 3333 |
| chr6 | 2492021 | 1.46% | 4258 |
| chr7 | 2078509 | 1.30% | 3493 |
| chr8 | 1626121 | 1.12% | 2808 |
| chr9 | 1701928 | 1.23% | 2897 |
| chr10 | 1933660 | 1.45% | 3284 |
| chr11 | 2116611 | 1.57% | 3521 |
| chr12 | 2095674 | 1.57% | 3459 |
| chr13 | 906443 | 0.79% | 1556 |
| chr14 | 1454075 | 1.36% | 2506 |
| chr15 | 1414505 | 1.39% | 2427 |
| chr16 | 1609427 | 1.78% | 2593 |
| chr17 | 2245642 | 2.70% | 3658 |
| chr18 | 710705 | 0.88% | 1245 |
| chr19 | 2042516 | 3.48% | 3177 |
| chr20 | 1166119 | 1.81% | 1972 |
| chr21 | 551061 | 1.18% | 919 |
| chr22 | 986545 | 1.94% | 1621 |
| chrX | 1175706 | 0.75% | 1926 |
| chrY | 57141 | 0.10% | 102 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 70381 | 150 | 2849 | 594.67 | 501 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF792EFB.bed.gz | 2.96 MB | b0880c8df275fd697862ece62efd8b8b |
| ENCFF792EFB.tabix.bed.gz | 806.71 KB | 03ffb5a8da77155d792c2d05961f765e |
| ENCFF792EFB.tabix.bed.gz.tbi | 318.94 KB | ad0ec89097ae0f830e2225e29f5e82c8 |
| genomic_resource.yaml | 2.95 KB | 464db00f961031fe567abe9628001833 |
| statistics/ |