ATAC-seq_ENCSR979TCG
ATAC-seq ENCSR979TCG [biosample_summary="Homo sapiens spleen tissue female adult (47 years)"]
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| Id: | ATAC-seq/ENCSR979TCG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR979TCG [biosample_summary="Homo sapiens spleen tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN653JWH|/analyses/ENCAN653JWH/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF468VMN|/files/ENCFF468VMN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.19. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF503TXC|/files/ENCFF503TXC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.864606. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF503TXC|/files/ENCFF503TXC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR979TCG | float |
ATAC-seq_ENCSR979TCG |
ATAC-seq ENCSR979TCG [biosample_summary="Homo sapiens spleen tissue female adult (47 years)"]
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[1.75, 43.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF468VMN.bed.gz | 5.6 MB | b5af80fcb3a9bb068c4ca68ae49ef083 |
| ENCFF468VMN.bed.gz.dvc | 101.0 B | f29ceee6fc9046d6e064fdf665ae6caa |
| ENCFF468VMN.tabix.bed.gz | 1.85 MB | 209bf7f918b143c7eda5676db47c30c1 |
| ENCFF468VMN.tabix.bed.gz.dvc | 107.0 B | 6a8aa06795ee3dfabe96048466d56dcf |
| ENCFF468VMN.tabix.bed.gz.tbi | 656.14 KB | c3ba0f3ff2add50a7caa987ec2d554a7 |
| ENCFF468VMN.tabix.bed.gz.tbi.dvc | 110.0 B | 8c086c23d09ed6a2cd80cf5a6efbabd5 |
| genomic_resource.yaml | 3.32 KB | fc2ee2f4ea5be469f7f4f706fd8e97b8 |
| genomic_resource_original.yaml | 3.23 KB | a59899bff7d05bd43082849a3fa45c88 |
| statistics/ |