ATAC-seq_ENCSR977LVI
ATAC-seq ENCSR977LVI [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
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| Id: | ATAC-seq/ENCSR977LVI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR977LVI [biosample_summary="Homo sapiens T-cell female adult (21 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (21 years) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN976NRE|/analyses/ENCAN976NRE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF984NGC|/files/ENCFF984NGC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.821531. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF984NGC|/files/ENCFF984NGC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978AJO|/files/ENCFF978AJO/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.798795. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978AJO|/files/ENCFF978AJO/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR977LVI | float |
ATAC-seq_ENCSR977LVI |
ATAC-seq ENCSR977LVI [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
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[1.25, 45.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF273DGN.bed.gz | 3.04 MB | 149ad318f7521936c22ba30db0318667 |
| ENCFF273DGN.bed.gz.dvc | 101.0 B | 5cbaebba6b2f8928c5d42ed2ede71d2b |
| ENCFF273DGN.tabix.bed.gz | 769.92 KB | 934d0476aa310dcffd2e7fb1285961b9 |
| ENCFF273DGN.tabix.bed.gz.dvc | 106.0 B | 38fd0d3457ecb32bf85268e810575ddb |
| ENCFF273DGN.tabix.bed.gz.tbi | 294.72 KB | 035fed42f4cc8ac74c78c90b0c990cf0 |
| ENCFF273DGN.tabix.bed.gz.tbi.dvc | 110.0 B | 6227b4f8445fef3eff7206d558147061 |
| genomic_resource.yaml | 3.7 KB | f08a42a5fb6aea0d683840c4ae827a24 |
| genomic_resource_original.yaml | 3.61 KB | 02dde11aea78356a661d4e2f571870b8 |
| statistics/ |