ATAC-seq_ENCSR970UNF
ATAC-seq ENCSR970UNF [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
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| Id: | ATAC-seq/ENCSR970UNF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR970UNF [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473PQP|/analyses/ENCAN473PQP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF639AQK|/files/ENCFF639AQK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.882124. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF639AQK|/files/ENCFF639AQK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR970UNF | float |
ATAC-seq_ENCSR970UNF |
ATAC-seq ENCSR970UNF [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
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[1.29, 39.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF081FUV.bed.gz | 6.87 MB | 884eeaa7186cd3187ca61efe279dbbb2 |
| ENCFF081FUV.bed.gz.dvc | 101.0 B | b3003cde7a8a6753eb6baeadd8278a6d |
| ENCFF081FUV.tabix.bed.gz | 1.85 MB | 73dd8c8cdea8f7b3cd3ee697e267cf5a |
| ENCFF081FUV.tabix.bed.gz.dvc | 107.0 B | 2d2a917ec617cdc5be6e82ca49ea9c9b |
| ENCFF081FUV.tabix.bed.gz.tbi | 489.78 KB | 38d4f7f1441c40393773712a6b9ab2c4 |
| ENCFF081FUV.tabix.bed.gz.tbi.dvc | 110.0 B | 90ad8270f1a8d82109f7ab9b7f878456 |
| genomic_resource.yaml | 2.58 KB | 1efb54bdde3ca40f57148b4e7ce5e437 |
| genomic_resource_original.yaml | 2.48 KB | 7e6d8cc434535c8bd1c83b7441c406f1 |
| statistics/ |