Resource
| Id | ATAC-seq/ENCSR962ITF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR962ITF [biosample_summary="Homo sapiens HG03108"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN987JGS|/analyses/ENCAN987JGS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF948HNW|/files/ENCFF948HNW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.895036. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR962ITF | float |
ATAC-seq_ENCSR962ITF |
ATAC-seq ENCSR962ITF [biosample_summary="Homo sapiens HG03108"]
|
 |
[1.6, 32.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 48132331 | 1.50% | 96926 |
| chr1 | 4392115 | 1.76% | 8743 |
| chr2 | 4045318 | 1.67% | 8349 |
| chr3 | 3286711 | 1.66% | 6792 |
| chr4 | 2545968 | 1.34% | 5342 |
| chr5 | 2800493 | 1.54% | 5821 |
| chr6 | 3211990 | 1.88% | 6517 |
| chr7 | 2619394 | 1.64% | 5377 |
| chr8 | 2282787 | 1.57% | 4723 |
| chr9 | 1932137 | 1.40% | 3898 |
| chr10 | 2340651 | 1.75% | 4719 |
| chr11 | 2320058 | 1.72% | 4706 |
| chr12 | 2386020 | 1.79% | 4778 |
| chr13 | 1282148 | 1.12% | 2645 |
| chr14 | 1531135 | 1.43% | 2997 |
| chr15 | 1441763 | 1.41% | 2853 |
| chr16 | 1465237 | 1.62% | 2768 |
| chr17 | 1852789 | 2.23% | 3503 |
| chr18 | 1048369 | 1.30% | 2167 |
| chr19 | 1492545 | 2.55% | 2582 |
| chr20 | 1098936 | 1.71% | 2214 |
| chr21 | 488292 | 1.05% | 924 |
| chr22 | 727276 | 1.43% | 1348 |
| chrX | 1539220 | 0.99% | 3156 |
| chrY | 979 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96926 | 150 | 3033 | 496.59 | 412 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF876EEH.bed.gz | 3.41 MB | c1cd53e3a7e5421ca86275a15ca13c1f |
| ENCFF876EEH.tabix.bed.gz | 1.05 MB | db72218c4399764cf27ada780c7f1fef |
| ENCFF876EEH.tabix.bed.gz.tbi | 427.74 KB | 5f4bac6e48e02adaebe27572288a1da2 |
| genomic_resource.yaml | 1.82 KB | aa19145b51fd669ed54fda53d2c6327e |
| statistics/ |