Resource

Id ATAC-seq/ENCSR952SPOcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR952SPO [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR952SPO
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female child (16 years)
  • date_created: 2019-05-25T07:51:37.826589+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR952SPO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR952SPO float

ATAC-seq_ENCSR952SPO

ATAC-seq ENCSR952SPO [biosample_summary="Homo sapiens right lobe of liver tissue female child (16 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR952SPO [1.23, 41.8]
n
105,528,900
mean
5.98
sd
3.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1055289003.28% 162248
chr1 10051177 4.04% 15300
chr2 8565792 3.54% 13297
chr3 6898904 3.48% 10854
chr4 4843728 2.55% 7685
chr5 5527332 3.04% 8744
chr6 6241227 3.65% 9651
chr7 5513105 3.46% 8489
chr8 4646462 3.20% 7275
chr9 4569750 3.30% 6935
chr10 5356633 4.00% 8261
chr11 5314646 3.93% 8080
chr12 5269471 3.95% 8117
chr13 2596058 2.27% 4031
chr14 3348341 3.13% 5122
chr15 3423238 3.36% 5283
chr16 3719078 4.12% 5512
chr17 4651996 5.59% 6898
chr18 2372464 2.95% 3702
chr19 3400104 5.80% 4874
chr20 2684626 4.17% 4165
chr21 1357311 2.91% 1982
chr22 2210724 4.35% 3226
chrX 2965590 1.90% 4760
chrY 1143 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162248 150 4253 650.42 527
global segment-length histogram

Files

Filename Size md5
ENCFF921BTJ.bed.gz 6.74 MB 1f2228c9c9d94ed6b374345e261efbe6
ENCFF921BTJ.tabix.bed.gz 1.79 MB 978bad85db89e69955bbfe1c8152c01f
ENCFF921BTJ.tabix.bed.gz.tbi 505.28 KB 834e5ed6bd5c397195b7899b79ba2594
genomic_resource.yaml 1.65 KB e6850b42c6ec0e062be334c29b4c755d
statistics/