ATAC-seq_ENCSR948MQC
ATAC-seq ENCSR948MQC [biosample_summary="Homo sapiens lower lobe of right lung tissue female adult (65 years)"]
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| Id: | ATAC-seq/ENCSR948MQC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR948MQC [biosample_summary="Homo sapiens lower lobe of right lung tissue female adult (65 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (65 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN887UPQ|/analyses/ENCAN887UPQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN887UPQ|/analyses/ENCAN887UPQ/} has in progress subobject document {a625f412-7c53-4ae2-a930-80a944ebe16b|/documents/a625f412-7c53-4ae2-a930-80a944ebe16b/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF355BVL|/files/ENCFF355BVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.873796. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF355BVL|/files/ENCFF355BVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR948MQC | float |
ATAC-seq_ENCSR948MQC |
ATAC-seq ENCSR948MQC [biosample_summary="Homo sapiens lower lobe of right lung tissue female adult (65 years)"]
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[1.21, 27.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF901RIY.bed.gz | 5.83 MB | 5b325084cafff9d91ebd920ee106fa6a |
| ENCFF901RIY.bed.gz.dvc | 101.0 B | 9e0b894a933f17ae08ad5ce36c658965 |
| ENCFF901RIY.tabix.bed.gz | 1.6 MB | daac5d9b74e91b894b6645eba7017ec7 |
| ENCFF901RIY.tabix.bed.gz.dvc | 107.0 B | a732b9f26a1106a4f59f8208b37a282b |
| ENCFF901RIY.tabix.bed.gz.tbi | 482.98 KB | c9057467851bd6ab183b315de96fe123 |
| ENCFF901RIY.tabix.bed.gz.tbi.dvc | 110.0 B | d077bfec15b163414d90f5424cf6cdd9 |
| genomic_resource.yaml | 2.83 KB | 955187fd22e98716b9c2e0b48455ba92 |
| genomic_resource_original.yaml | 2.72 KB | 2590aee88dc4d6770fe4070478710a5c |
| statistics/ |