| Id: | ATAC-seq/ENCSR946MAI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR946MAI [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_error: Alignment file {ENCFF470IIW|/files/ENCFF470IIW/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 7967567 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_internal_action: Released analysis {ENCAN076MSE|/analyses/ENCAN076MSE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF199BCX|/files/ENCFF199BCX/} (overlap peaks) and {ENCFF200KIN|/files/ENCFF200KIN/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 92845 and 37565 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR946MAI | float |
ATAC-seq_ENCSR946MAI |
ATAC-seq ENCSR946MAI [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)"]
|
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[1.8, 30.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF199BCX.bed.gz | 2.29 MB | 4f9f30eb4f62212130a0cceef373de45 |
| ENCFF199BCX.bed.gz.dvc | 101.0 B | 4c4d5c8ac9012dabf004315a7a4b6e64 |
| ENCFF199BCX.tabix.bed.gz | 787.32 KB | e74a15df11ee795531cb03f1286c0c1b |
| ENCFF199BCX.tabix.bed.gz.dvc | 106.0 B | c0350c81d9b8e18fa09a89fdd164ce7c |
| ENCFF199BCX.tabix.bed.gz.tbi | 345.57 KB | 73edf3d3009f040ec02001e5e6db81df |
| ENCFF199BCX.tabix.bed.gz.tbi.dvc | 110.0 B | bd7d665ebecc1f1622eae3ed890d0301 |
| genomic_resource.yaml | 2.59 KB | fb613146bd11840dced22edea34c3b9a |
| genomic_resource_original.yaml | 2.47 KB | ca3a5075873c076bae6426757df0931c |
| statistics/ |