ATAC-seq_ENCSR940YDN
ATAC-seq ENCSR940YDN [biosample_summary="Homo sapiens HG03159"]
×
| Id: | ATAC-seq/ENCSR940YDN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR940YDN [biosample_summary="Homo sapiens HG03159"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN166LQN|/analyses/ENCAN166LQN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF998WJT|/files/ENCFF998WJT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.851829. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF998WJT|/files/ENCFF998WJT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.85. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR940YDN | float |
ATAC-seq_ENCSR940YDN |
ATAC-seq ENCSR940YDN [biosample_summary="Homo sapiens HG03159"]
|
|
[1.41, 45.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF143WNQ.bed.gz | 4.13 MB | c368a1717a95e5ddb9242a1fb887c804 |
| ENCFF143WNQ.bed.gz.dvc | 101.0 B | 6b380e1390c1d332d2981c54b2472622 |
| ENCFF143WNQ.tabix.bed.gz | 1.15 MB | a75f1f9bf208febb339b390639a508b4 |
| ENCFF143WNQ.tabix.bed.gz.dvc | 107.0 B | 555811b61c3faa0265b18baac8b0a12d |
| ENCFF143WNQ.tabix.bed.gz.tbi | 460.83 KB | f5330000b7e819403a70b3dce6de83e2 |
| ENCFF143WNQ.tabix.bed.gz.tbi.dvc | 110.0 B | ddce4be0b47db677d1c03868d74606ce |
| genomic_resource.yaml | 2.49 KB | 7fe5d3c0466f8bd8f27c6ac44d1fdff0 |
| genomic_resource_original.yaml | 2.42 KB | 13653fd12ed469610c215a820b8ea568 |
| statistics/ |