ATAC-seq_ENCSR939EVW
ATAC-seq ENCSR939EVW [biosample_summary="Homo sapiens GM21528"]
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| Id: | ATAC-seq/ENCSR939EVW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR939EVW [biosample_summary="Homo sapiens GM21528"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN429VFC|/analyses/ENCAN429VFC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF249WBT|/files/ENCFF249WBT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.19. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF088VJQ|/files/ENCFF088VJQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.795735. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF088VJQ|/files/ENCFF088VJQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR939EVW | float |
ATAC-seq_ENCSR939EVW |
ATAC-seq ENCSR939EVW [biosample_summary="Homo sapiens GM21528"]
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[1.52, 23.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF249WBT.bed.gz | 3.58 MB | b4235b51ee93731182382b196b7e7f15 |
| ENCFF249WBT.bed.gz.dvc | 101.0 B | bc5bff6b4ec513c269c5fd04a72e3fdc |
| ENCFF249WBT.tabix.bed.gz | 953.56 KB | 09c3fd430aa1dcd24bc3b95f15decf6c |
| ENCFF249WBT.tabix.bed.gz.dvc | 106.0 B | 5d43757f01202ee0fbc3610ac1c3f433 |
| ENCFF249WBT.tabix.bed.gz.tbi | 398.82 KB | 1316c79f17a784e5d13d1bb6d14d1b97 |
| ENCFF249WBT.tabix.bed.gz.tbi.dvc | 110.0 B | e771d88eb537ac37513104a8f9a7dcbe |
| genomic_resource.yaml | 2.91 KB | 3c721cfdcca2dff2d92d240072d645b3 |
| genomic_resource_original.yaml | 2.84 KB | 4e2f46dff2befa6572678c05dfc84972 |
| statistics/ |