Resource

Id ATAC-seq/ENCSR934AWQcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR934AWQ [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR934AWQ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (38 years)
  • date_created: 2021-01-22T20:57:29.030868+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR934AWQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR934AWQ float

ATAC-seq_ENCSR934AWQ
ATAC-seq ENCSR934AWQ [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR934AWQ [1.45, 38.3]
n
31,152,185
mean
8.95
sd
4.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 311521850.97% 54599
chr1 3165710 1.27% 5443
chr2 2328954 0.96% 4237
chr3 1744989 0.88% 3110
chr4 1111172 0.58% 1968
chr5 1409038 0.78% 2489
chr6 1811572 1.06% 3240
chr7 1521873 0.96% 2702
chr8 1154455 0.80% 2092
chr9 1217837 0.88% 2127
chr10 1457571 1.09% 2665
chr11 1602956 1.19% 2803
chr12 1569618 1.18% 2715
chr13 671255 0.59% 1208
chr14 1104326 1.03% 1952
chr15 1040987 1.02% 1876
chr16 1230764 1.36% 2041
chr17 1828198 2.20% 3076
chr18 509021 0.63% 958
chr19 1687903 2.88% 2763
chr20 862817 1.34% 1526
chr21 426801 0.91% 729
chr22 778169 1.53% 1315
chrX 868572 0.56% 1482
chrY 47627 0.08% 82
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54599 150 2579 570.56 467
global segment-length histogram

Files

Filename Size md5
ENCFF628SES.bed.gz 2.35 MB 29862dbe8d02757ac56a9477db4808ac
ENCFF628SES.tabix.bed.gz 625.14 KB e72cbba3de91c8067fe53beb41291518
ENCFF628SES.tabix.bed.gz.tbi 275.23 KB e873fdfe71fe37036b740f5373a481cd
genomic_resource.yaml 1.92 KB 607bf87a86dda228d87113d4a8683165
statistics/