Resource

Id ATAC-seq/ENCSR926GDTcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR926GDT [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR926GDT
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2016-10-12T02:41:16.643558+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR926GDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR926GDT float

ATAC-seq_ENCSR926GDT
ATAC-seq ENCSR926GDT [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR926GDT [1.51, 38.3]
n
56,273,072
mean
7.41
sd
4.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 562730721.75% 128415
chr1 5169165 2.08% 11720
chr2 4668124 1.93% 10966
chr3 3688758 1.86% 8561
chr4 2628585 1.38% 6149
chr5 3037970 1.67% 7084
chr6 3361184 1.97% 7731
chr7 2993790 1.88% 6833
chr8 2665498 1.84% 6210
chr9 2392930 1.73% 5483
chr10 2719939 2.03% 6356
chr11 2782745 2.06% 6308
chr12 2760138 2.07% 6316
chr13 1374627 1.20% 3223
chr14 1765366 1.65% 4005
chr15 1756095 1.72% 4031
chr16 1867436 2.07% 4023
chr17 2426216 2.91% 5249
chr18 1256552 1.56% 2975
chr19 2037790 3.48% 4057
chr20 1491673 2.31% 3403
chr21 734539 1.57% 1642
chr22 998201 1.96% 2171
chrX 1692706 1.08% 3906
chrY 3045 0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 128415 150 2680 438.21 363
global segment-length histogram

Files

Filename Size md5
ENCFF729DET.bed.gz 4.17 MB b310424d6f5b6cd800b53b15ab244e87
ENCFF729DET.tabix.bed.gz 1.37 MB 5890c3a5073c09d23410915bc228023e
ENCFF729DET.tabix.bed.gz.tbi 486.69 KB fbafa7b59b947b929f1bcd31daed7da2
genomic_resource.yaml 1.58 KB 563ef4ed5ef3d6820523850af063a78e
statistics/