ATAC-seq_ENCSR924SDV
ATAC-seq ENCSR924SDV [biosample_summary="Homo sapiens GM18498"]
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| Id: | ATAC-seq/ENCSR924SDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR924SDV [biosample_summary="Homo sapiens GM18498"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN548VPB|/analyses/ENCAN548VPB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF935PGL|/files/ENCFF935PGL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.727533. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF935PGL|/files/ENCFF935PGL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR924SDV | float |
ATAC-seq_ENCSR924SDV |
ATAC-seq ENCSR924SDV [biosample_summary="Homo sapiens GM18498"]
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[1.33, 29.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF717TCQ.bed.gz | 4.41 MB | b7a2a2b82c9b5aeedd1e489e1e0f8ad2 |
| ENCFF717TCQ.bed.gz.dvc | 101.0 B | 82024af4b55cd4b6c0c2fee9e61ef84b |
| ENCFF717TCQ.tabix.bed.gz | 1.21 MB | 7b4e89efea6e9d4a6a3df460bec084a5 |
| ENCFF717TCQ.tabix.bed.gz.dvc | 107.0 B | a4db8a5c18d9de712b0ddedefa97f4af |
| ENCFF717TCQ.tabix.bed.gz.tbi | 470.44 KB | f2996bf48eb3761285a8faccc596cbb3 |
| ENCFF717TCQ.tabix.bed.gz.tbi.dvc | 110.0 B | 6b3a1d96a0ea7193a74746fe13a01c20 |
| genomic_resource.yaml | 2.49 KB | 7724b5db5d97e6ade4984ca5b01f7eb1 |
| genomic_resource_original.yaml | 2.42 KB | afed0909b101a5c83fd6e69d11801132 |
| statistics/ |