Resource
| Id | ATAC-seq/ENCSR923VTG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR923VTG [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN008ZRY|/analyses/ENCAN008ZRY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF154GTM|/files/ENCFF154GTM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.882589. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF154GTM|/files/ENCFF154GTM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR923VTG | float |
ATAC-seq_ENCSR923VTG |
ATAC-seq ENCSR923VTG [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"]
|
 |
[1.31, 30.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 85513160 | 2.66% | 144959 |
| chr1 | 7963332 | 3.20% | 13465 |
| chr2 | 6864349 | 2.83% | 11891 |
| chr3 | 5260461 | 2.65% | 9204 |
| chr4 | 3735365 | 1.96% | 6550 |
| chr5 | 4409452 | 2.43% | 7605 |
| chr6 | 4910205 | 2.87% | 8518 |
| chr7 | 4550194 | 2.86% | 7749 |
| chr8 | 3711406 | 2.56% | 6446 |
| chr9 | 3758411 | 2.72% | 6315 |
| chr10 | 4297262 | 3.21% | 7461 |
| chr11 | 4394538 | 3.25% | 7328 |
| chr12 | 3971144 | 2.98% | 6745 |
| chr13 | 2239442 | 1.96% | 3810 |
| chr14 | 2760820 | 2.58% | 4658 |
| chr15 | 2900133 | 2.84% | 4928 |
| chr16 | 3143388 | 3.48% | 5152 |
| chr17 | 4158282 | 4.99% | 6639 |
| chr18 | 1900674 | 2.36% | 3375 |
| chr19 | 3455035 | 5.89% | 5187 |
| chr20 | 2362232 | 3.67% | 4088 |
| chr21 | 1272330 | 2.72% | 2089 |
| chr22 | 2013466 | 3.96% | 3186 |
| chrX | 1413973 | 0.91% | 2428 |
| chrY | 67266 | 0.12% | 142 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 144959 | 150 | 3997 | 589.91 | 475 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF189LZA.bed.gz | 5.29 MB | 22910309e2483e6b9df673d7c187b5af |
| ENCFF189LZA.tabix.bed.gz | 1.57 MB | 252d7731760103d8ab53f4d7400a6280 |
| ENCFF189LZA.tabix.bed.gz.tbi | 511.62 KB | 40891b86cfae709fa14c238017383734 |
| genomic_resource.yaml | 2.61 KB | ca1fc189f5cacc4df0a06fbae87c6676 |
| statistics/ |