ATAC-seq_ENCSR923VTG
ATAC-seq ENCSR923VTG [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"]
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| Id: | ATAC-seq/ENCSR923VTG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR923VTG [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN008ZRY|/analyses/ENCAN008ZRY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF154GTM|/files/ENCFF154GTM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.882589. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF154GTM|/files/ENCFF154GTM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR923VTG | float |
ATAC-seq_ENCSR923VTG |
ATAC-seq ENCSR923VTG [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"]
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[1.31, 30.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF189LZA.bed.gz | 5.29 MB | 22910309e2483e6b9df673d7c187b5af |
| ENCFF189LZA.bed.gz.dvc | 101.0 B | b854828cc318f7db87a2a08e36d8ea2b |
| ENCFF189LZA.tabix.bed.gz | 1.57 MB | 252d7731760103d8ab53f4d7400a6280 |
| ENCFF189LZA.tabix.bed.gz.dvc | 107.0 B | 70bb5198255319a4160abc765402dc90 |
| ENCFF189LZA.tabix.bed.gz.tbi | 511.62 KB | 40891b86cfae709fa14c238017383734 |
| ENCFF189LZA.tabix.bed.gz.tbi.dvc | 110.0 B | 38bd6e14d3d8386d938210623b2f8955 |
| genomic_resource.yaml | 2.61 KB | ca1fc189f5cacc4df0a06fbae87c6676 |
| genomic_resource_original.yaml | 2.5 KB | 9b4f5d6a478c827608d6ac400b2cfe8c |
| statistics/ |