ATAC-seq_ENCSR920FQJ
ATAC-seq ENCSR920FQJ [biosample_summary="Homo sapiens HG02938"]
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| Id: | ATAC-seq/ENCSR920FQJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR920FQJ [biosample_summary="Homo sapiens HG02938"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN590GJR|/analyses/ENCAN590GJR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF966ELR|/files/ENCFF966ELR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83621. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF966ELR|/files/ENCFF966ELR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR920FQJ | float |
ATAC-seq_ENCSR920FQJ |
ATAC-seq ENCSR920FQJ [biosample_summary="Homo sapiens HG02938"]
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[1.52, 31.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF388ZHA.bed.gz | 3.94 MB | 1f5fdce22259f5761f71f802833619d3 |
| ENCFF388ZHA.bed.gz.dvc | 101.0 B | b6d45255d8406278124e0d3253ec0393 |
| ENCFF388ZHA.tabix.bed.gz | 1.15 MB | e53e9aaca2befba264e5320185840a97 |
| ENCFF388ZHA.tabix.bed.gz.dvc | 107.0 B | 6945a02d78b6b9b85a63070238faf6dc |
| ENCFF388ZHA.tabix.bed.gz.tbi | 475.31 KB | 67e7123540a2d11dc4a4b1727ef3769e |
| ENCFF388ZHA.tabix.bed.gz.tbi.dvc | 110.0 B | 5569e8e7e16ee1003fc318517e1e4f11 |
| genomic_resource.yaml | 2.48 KB | 09a7327de3f7da80ae852b6d4c180c3b |
| genomic_resource_original.yaml | 2.42 KB | 587b6d36b5740d34e5b1d710deaef8ea |
| statistics/ |