Resource
| Id | ATAC-seq/ENCSR920FQJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR920FQJ [biosample_summary="Homo sapiens HG02938"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN590GJR|/analyses/ENCAN590GJR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF966ELR|/files/ENCFF966ELR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.83621. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF966ELR|/files/ENCFF966ELR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR920FQJ | float |
ATAC-seq_ENCSR920FQJ |
ATAC-seq ENCSR920FQJ [biosample_summary="Homo sapiens HG02938"]
|
 |
[1.52, 31.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55226902 | 1.72% | 106514 |
| chr1 | 4906654 | 1.97% | 9315 |
| chr2 | 4922836 | 2.03% | 9688 |
| chr3 | 4050643 | 2.04% | 8057 |
| chr4 | 3408307 | 1.79% | 6876 |
| chr5 | 3464155 | 1.91% | 6911 |
| chr6 | 3754461 | 2.20% | 7352 |
| chr7 | 3134402 | 1.97% | 6172 |
| chr8 | 2845475 | 1.96% | 5690 |
| chr9 | 2221563 | 1.61% | 4267 |
| chr10 | 2651560 | 1.98% | 5102 |
| chr11 | 2668865 | 1.98% | 5110 |
| chr12 | 2762614 | 2.07% | 5290 |
| chr13 | 1553879 | 1.36% | 3099 |
| chr14 | 1604936 | 1.50% | 3001 |
| chr15 | 1563088 | 1.53% | 2929 |
| chr16 | 1455989 | 1.61% | 2559 |
| chr17 | 1673085 | 2.01% | 2968 |
| chr18 | 1309770 | 1.63% | 2662 |
| chr19 | 1298063 | 2.21% | 2022 |
| chr20 | 1085904 | 1.69% | 2067 |
| chr21 | 489096 | 1.05% | 889 |
| chr22 | 603902 | 1.19% | 1028 |
| chrX | 1681378 | 1.08% | 3216 |
| chrY | 116277 | 0.20% | 244 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106514 | 150 | 2983 | 518.49 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF388ZHA.bed.gz | 3.94 MB | 1f5fdce22259f5761f71f802833619d3 |
| ENCFF388ZHA.tabix.bed.gz | 1.15 MB | e53e9aaca2befba264e5320185840a97 |
| ENCFF388ZHA.tabix.bed.gz.tbi | 475.31 KB | 67e7123540a2d11dc4a4b1727ef3769e |
| genomic_resource.yaml | 2.48 KB | 09a7327de3f7da80ae852b6d4c180c3b |
| statistics/ |