ATAC-seq_ENCSR918TVE
ATAC-seq ENCSR918TVE [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"]
×
| Id: | ATAC-seq/ENCSR918TVE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR918TVE [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN093OTD|/analyses/ENCAN093OTD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN093OTD|/analyses/ENCAN093OTD/} has in progress subobject document {98613387-7db5-4838-b03d-5b38f646aafb|/documents/98613387-7db5-4838-b03d-5b38f646aafb/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF499TDM|/files/ENCFF499TDM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.888175. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF499TDM|/files/ENCFF499TDM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR918TVE | float |
ATAC-seq_ENCSR918TVE |
ATAC-seq ENCSR918TVE [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"]
|
|
[1.2, 41.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF707EUL.bed.gz | 4.81 MB | b0b9e1b215ce742f733a33ae9b0e466a |
| ENCFF707EUL.bed.gz.dvc | 101.0 B | e5175184316f0b7ad5dbaa3e02ac98f4 |
| ENCFF707EUL.tabix.bed.gz | 1.22 MB | 227198e30f11c1577965681a55332c4d |
| ENCFF707EUL.tabix.bed.gz.dvc | 107.0 B | 34ab186ddd012929e284ede5952f694d |
| ENCFF707EUL.tabix.bed.gz.tbi | 446.87 KB | 349bfc1a943dff5e475133eb9cbbad9a |
| ENCFF707EUL.tabix.bed.gz.tbi.dvc | 110.0 B | 678f5cfda466f0fa5c6925bf49ab2330 |
| genomic_resource.yaml | 2.78 KB | c37a1aada80b27a53a9a4d797a87321c |
| genomic_resource_original.yaml | 2.68 KB | 322dab1d8416e290522bf2cf350f1881 |
| statistics/ |