Resource
| Id | ATAC-seq/ENCSR918TVE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR918TVE [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN093OTD|/analyses/ENCAN093OTD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN093OTD|/analyses/ENCAN093OTD/} has in progress subobject document {98613387-7db5-4838-b03d-5b38f646aafb|/documents/98613387-7db5-4838-b03d-5b38f646aafb/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF499TDM|/files/ENCFF499TDM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.888175. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF499TDM|/files/ENCFF499TDM/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR918TVE | float |
ATAC-seq_ENCSR918TVE |
ATAC-seq ENCSR918TVE [biosample_summary="Homo sapiens pancreas tissue female adult (47 years)"]
|
 |
[1.2, 41.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 68716151 | 2.14% | 110504 |
| chr1 | 6605737 | 2.65% | 10447 |
| chr2 | 5557057 | 2.29% | 9126 |
| chr3 | 4384671 | 2.21% | 7263 |
| chr4 | 3336301 | 1.75% | 5615 |
| chr5 | 3657554 | 2.01% | 5976 |
| chr6 | 4107942 | 2.41% | 6531 |
| chr7 | 3750702 | 2.35% | 6062 |
| chr8 | 3086931 | 2.13% | 5076 |
| chr9 | 2981984 | 2.15% | 4758 |
| chr10 | 3453091 | 2.58% | 5603 |
| chr11 | 3462030 | 2.56% | 5464 |
| chr12 | 3297861 | 2.47% | 5243 |
| chr13 | 1712129 | 1.50% | 2859 |
| chr14 | 2313799 | 2.16% | 3697 |
| chr15 | 2217083 | 2.17% | 3566 |
| chr16 | 2280321 | 2.52% | 3475 |
| chr17 | 2951876 | 3.55% | 4510 |
| chr18 | 1495688 | 1.86% | 2530 |
| chr19 | 2384166 | 4.07% | 3509 |
| chr20 | 1672412 | 2.60% | 2753 |
| chr21 | 845529 | 1.81% | 1334 |
| chr22 | 1304541 | 2.57% | 2032 |
| chrX | 1856156 | 1.19% | 3073 |
| chrY | 590 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110504 | 150 | 4367 | 621.84 | 500 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF707EUL.bed.gz | 4.81 MB | b0b9e1b215ce742f733a33ae9b0e466a |
| ENCFF707EUL.tabix.bed.gz | 1.22 MB | 227198e30f11c1577965681a55332c4d |
| ENCFF707EUL.tabix.bed.gz.tbi | 446.87 KB | 349bfc1a943dff5e475133eb9cbbad9a |
| genomic_resource.yaml | 2.78 KB | c37a1aada80b27a53a9a4d797a87321c |
| statistics/ |