ATAC-seq_ENCSR917WJS
ATAC-seq ENCSR917WJS [biosample_summary="Homo sapiens GM18909"]
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| Id: | ATAC-seq/ENCSR917WJS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR917WJS [biosample_summary="Homo sapiens GM18909"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN854FSU|/analyses/ENCAN854FSU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF572IWC|/files/ENCFF572IWC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.670782. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF572IWC|/files/ENCFF572IWC/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR917WJS | float |
ATAC-seq_ENCSR917WJS |
ATAC-seq ENCSR917WJS [biosample_summary="Homo sapiens GM18909"]
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[1.42, 34.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF983UBQ.bed.gz | 4.33 MB | 4113cf8082b351038df196dee5c87776 |
| ENCFF983UBQ.bed.gz.dvc | 101.0 B | 89abec0239f0b65fce8d36bd00572582 |
| ENCFF983UBQ.tabix.bed.gz | 1.2 MB | 3fb9eb853c127fbc0a3933eb10cc4be6 |
| ENCFF983UBQ.tabix.bed.gz.dvc | 107.0 B | 63a97b700abde01912739f9367f217e1 |
| ENCFF983UBQ.tabix.bed.gz.tbi | 465.06 KB | eeb4877af38582fa3f1e1fa55d03e295 |
| ENCFF983UBQ.tabix.bed.gz.tbi.dvc | 110.0 B | 6bb556fe642b1557165440293644c4fd |
| genomic_resource.yaml | 2.49 KB | 837373e9cbb0e8dd5ffbe03a41d013c8 |
| genomic_resource_original.yaml | 2.42 KB | 268b79911569090014503cc1e856d86c |
| statistics/ |