Resource
| Id | ATAC-seq/ENCSR915MTG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR915MTG [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN959NCQ|/analyses/ENCAN959NCQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF345NPU|/files/ENCFF345NPU/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.878603. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR915MTG | float |
ATAC-seq_ENCSR915MTG |
ATAC-seq ENCSR915MTG [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]
|
 |
[1.27, 41.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46667656 | 1.45% | 76023 |
| chr1 | 4677009 | 1.88% | 7562 |
| chr2 | 3647376 | 1.51% | 6107 |
| chr3 | 2842430 | 1.43% | 4801 |
| chr4 | 1775374 | 0.93% | 2995 |
| chr5 | 2188824 | 1.21% | 3669 |
| chr6 | 2879345 | 1.69% | 4688 |
| chr7 | 2292485 | 1.44% | 3758 |
| chr8 | 1824901 | 1.26% | 3045 |
| chr9 | 1885157 | 1.36% | 3081 |
| chr10 | 2193943 | 1.64% | 3592 |
| chr11 | 2343936 | 1.74% | 3759 |
| chr12 | 2337727 | 1.75% | 3762 |
| chr13 | 1017455 | 0.89% | 1737 |
| chr14 | 1627306 | 1.52% | 2663 |
| chr15 | 1587395 | 1.56% | 2621 |
| chr16 | 1779119 | 1.97% | 2744 |
| chr17 | 2497180 | 3.00% | 3882 |
| chr18 | 786851 | 0.98% | 1352 |
| chr19 | 2196729 | 3.75% | 3267 |
| chr20 | 1270615 | 1.97% | 2096 |
| chr21 | 576736 | 1.23% | 922 |
| chr22 | 1077366 | 2.12% | 1691 |
| chrX | 1303089 | 0.84% | 2124 |
| chrY | 59308 | 0.10% | 105 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76023 | 150 | 3165 | 613.86 | 509 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF980APH.bed.gz | 3.21 MB | 6b24e9bf9fc4b49200a48b5f09d781e1 |
| ENCFF980APH.tabix.bed.gz | 859.24 KB | 9a7add896244796f660d4aaf1305c673 |
| ENCFF980APH.tabix.bed.gz.tbi | 336.83 KB | eac9df10e98a2fc89f9bd2205bcbf101 |
| genomic_resource.yaml | 2.58 KB | 3060e8c05e04edeed72f88447ff92f0a |
| statistics/ |