Resource

Id ATAC-seq/ENCSR914DTIcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR914DTI [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR914DTI
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (53 years)
  • date_created: 2016-10-31T20:43:05.289749+00:00
  • date_released: 2016-10-31
  • doi: 10.17989/ENCSR914DTI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR914DTI float

ATAC-seq_ENCSR914DTI
ATAC-seq ENCSR914DTI [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR914DTI [1.55, 28.7]
n
34,134,142
mean
5.95
sd
2.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 341341421.06% 66636
chr1 3236890 1.30% 6185
chr2 2671056 1.10% 5302
chr3 2142245 1.08% 4277
chr4 1567902 0.82% 3169
chr5 1738838 0.96% 3528
chr6 1968277 1.15% 3883
chr7 1702320 1.07% 3364
chr8 1506665 1.04% 3022
chr9 1556546 1.12% 2989
chr10 1670241 1.25% 3322
chr11 1839508 1.36% 3531
chr12 1661166 1.25% 3219
chr13 847537 0.74% 1726
chr14 1113356 1.04% 2167
chr15 1098762 1.08% 2093
chr16 1246624 1.38% 2364
chr17 1539047 1.85% 2851
chr18 752600 0.94% 1515
chr19 1277397 2.18% 2249
chr20 925208 1.44% 1810
chr21 425532 0.91% 826
chr22 696983 1.37% 1351
chrX 947999 0.61% 1888
chrY 1443 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66636 150 2179 512.25 420
global segment-length histogram

Files

Filename Size md5
ENCFF966CUM.bed.gz 2.37 MB f391f5d96343a15bf6dae95874845d8c
ENCFF966CUM.tabix.bed.gz 743.7 KB 204f1b87b75908f81554aa120c6483ef
ENCFF966CUM.tabix.bed.gz.tbi 351.6 KB beef7d736e2466c863224be3083bb83a
genomic_resource.yaml 1.63 KB 54d182168d4d6780c0b19727cad60765
statistics/