ATAC-seq_ENCSR913OWV
ATAC-seq ENCSR913OWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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| Id: | ATAC-seq/ENCSR913OWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR913OWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (55 years) with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN476HEY|/analyses/ENCAN476HEY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF874HWI|/files/ENCFF874HWI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.776291. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF874HWI|/files/ENCFF874HWI/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF870LIP|/files/ENCFF870LIP/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with NRF value of 0.749319. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF870LIP|/files/ENCFF870LIP/} processed by ATAC-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR913OWV | float |
ATAC-seq_ENCSR913OWV |
ATAC-seq ENCSR913OWV [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron"]
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[1.28, 42.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF201ZDJ.bed.gz | 6.49 MB | 59f131cb6bb8a6dbb2619d3821e831d2 |
| ENCFF201ZDJ.bed.gz.dvc | 101.0 B | ac9219ab8245fe7cb90b1465528913d1 |
| ENCFF201ZDJ.tabix.bed.gz | 1.91 MB | 0fb24a6dad76c1139d693686d56da993 |
| ENCFF201ZDJ.tabix.bed.gz.dvc | 107.0 B | 160a6ac180d4126e138b1f4c63cdcffa |
| ENCFF201ZDJ.tabix.bed.gz.tbi | 599.66 KB | 4f98ac2e89eb0e15fe068e25767482b2 |
| ENCFF201ZDJ.tabix.bed.gz.tbi.dvc | 110.0 B | 18b6318b9e91a2f705b6fcb92b128d51 |
| genomic_resource.yaml | 3.88 KB | fe001c517ecdd49510363b8f42a5ae2c |
| genomic_resource_original.yaml | 3.76 KB | fec02b0499805bce179d80c89c456a08 |
| statistics/ |