ATAC-seq_ENCSR905PWV
ATAC-seq ENCSR905PWV [biosample_summary="Homo sapiens HG02610"]
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| Id: | ATAC-seq/ENCSR905PWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR905PWV [biosample_summary="Homo sapiens HG02610"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN233FCQ|/analyses/ENCAN233FCQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF230HVR|/files/ENCFF230HVR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.732417. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF230HVR|/files/ENCFF230HVR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR905PWV | float |
ATAC-seq_ENCSR905PWV |
ATAC-seq ENCSR905PWV [biosample_summary="Homo sapiens HG02610"]
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[1.41, 39.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF095HRI.bed.gz | 4.63 MB | f09e8fb60519300ce17c418bfca3afcb |
| ENCFF095HRI.bed.gz.dvc | 101.0 B | 7b72e81099c095224d96fa69491636bf |
| ENCFF095HRI.tabix.bed.gz | 1.38 MB | ffa1dbabe777e7b0a4fff92abe824eb5 |
| ENCFF095HRI.tabix.bed.gz.dvc | 107.0 B | 88c51dd340d0dcde2b6e9e85db5d05b8 |
| ENCFF095HRI.tabix.bed.gz.tbi | 508.19 KB | 50f36dea9c0387d5cdced3121943d8d0 |
| ENCFF095HRI.tabix.bed.gz.tbi.dvc | 110.0 B | 4c5eb09d3a895041663667de512c5949 |
| genomic_resource.yaml | 2.49 KB | e32817a5fe5dabacb264785386ff79f8 |
| genomic_resource_original.yaml | 2.42 KB | 246cf86d98a1d4513509628901583c47 |
| statistics/ |