Resource

Id ATAC-seq/ENCSR904UKRcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR904UKR [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 6 hours"]
Description
Labels
  • accession: ENCSR904UKR
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 6 hours
  • date_created: 2017-01-18T01:42:37.981115+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR904UKR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 6 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR904UKR float

ATAC-seq_ENCSR904UKR
ATAC-seq ENCSR904UKR [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 6 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR904UKR [1.38, 34]
n
49,652,907
mean
8.05
sd
4.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 496529071.54% 114858
chr1 4545047 1.83% 10511
chr2 4164759 1.72% 9790
chr3 3395028 1.71% 7973
chr4 2548954 1.34% 5968
chr5 2776308 1.53% 6550
chr6 3081890 1.80% 7173
chr7 2686661 1.69% 6177
chr8 2444374 1.68% 5745
chr9 2051515 1.48% 4764
chr10 2401733 1.80% 5650
chr11 2432430 1.80% 5634
chr12 2488556 1.87% 5797
chr13 1229384 1.07% 2875
chr14 1567699 1.46% 3604
chr15 1496499 1.47% 3496
chr16 1538734 1.70% 3356
chr17 1967692 2.36% 4385
chr18 1157393 1.44% 2715
chr19 1624424 2.77% 3339
chr20 1238636 1.92% 2864
chr21 613926 1.31% 1390
chr22 731663 1.44% 1623
chrX 1468418 0.94% 3475
chrY 1184 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114858 150 2459 432.3 364
global segment-length histogram

Files

Filename Size md5
ENCFF515SJI.bed.gz 3.69 MB d42ac67448d8913b08595ffbc5576a39
ENCFF515SJI.tabix.bed.gz 1.23 MB 71775234c5a604691ecee3a8b3e0c874
ENCFF515SJI.tabix.bed.gz.tbi 446.22 KB 3fc13071fb7152cc084f1e97e07336b8
genomic_resource.yaml 1.58 KB de8da19abc4c2ff5178eb28bd1ed63c3
statistics/