ATAC-seq_ENCSR903WVU
ATAC-seq ENCSR903WVU [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
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| Id: | ATAC-seq/ENCSR903WVU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR903WVU [biosample_summary="Homo sapiens naive B cell male adult (40 years)"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN213BBL|/analyses/ENCAN213BBL/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: Alignment file {ENCFF244SND|/files/ENCFF244SND/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23463576 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: Alignment file {ENCFF501GZR|/files/ENCFF501GZR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23408617 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF244SND|/files/ENCFF244SND/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.846287. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF244SND|/files/ENCFF244SND/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF501GZR|/files/ENCFF501GZR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.847939. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF501GZR|/files/ENCFF501GZR/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR903WVU | float |
ATAC-seq_ENCSR903WVU |
ATAC-seq ENCSR903WVU [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
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[1.29, 48.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF839DEM.bed.gz | 3.07 MB | 89887425ad2cef7b1d63ecfb7b9d3477 |
| ENCFF839DEM.bed.gz.dvc | 101.0 B | 61b1aaaac97ad8da2eae59efcfdcdadd |
| ENCFF839DEM.tabix.bed.gz | 892.62 KB | a9aa9431848d3b6239f8e89c76901ed0 |
| ENCFF839DEM.tabix.bed.gz.dvc | 106.0 B | d56a0a9b3be0928851eb3729127ef9b4 |
| ENCFF839DEM.tabix.bed.gz.tbi | 340.64 KB | 8210c3389e100d1f664dc665f6a03700 |
| ENCFF839DEM.tabix.bed.gz.tbi.dvc | 110.0 B | 2528a959f4ed14237280edf9500b9b3b |
| genomic_resource.yaml | 4.44 KB | ece14200d4a1d47e80bc78bf44ef81db |
| genomic_resource_original.yaml | 4.35 KB | d6a5c09ad7674f1dac340bb0a3558c9f |
| statistics/ |