ATAC-seq_ENCSR902CFR
ATAC-seq ENCSR902CFR [biosample_summary="Homo sapiens GM21423"]
×
| Id: | ATAC-seq/ENCSR902CFR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR902CFR [biosample_summary="Homo sapiens GM21423"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN433HIN|/analyses/ENCAN433HIN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF751SRZ|/files/ENCFF751SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.876147. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF751SRZ|/files/ENCFF751SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR902CFR | float |
ATAC-seq_ENCSR902CFR |
ATAC-seq ENCSR902CFR [biosample_summary="Homo sapiens GM21423"]
|
|
[1.43, 41.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF637TQK.bed.gz | 3.94 MB | 84c7d70005808599bfd2308e804c60ca |
| ENCFF637TQK.bed.gz.dvc | 101.0 B | 6165ee9d3ede8c0d9c2925942e5c9eab |
| ENCFF637TQK.tabix.bed.gz | 1.17 MB | 5a9d09181dbb6ce75931fd554b52d758 |
| ENCFF637TQK.tabix.bed.gz.dvc | 107.0 B | a80f07742cc5d40c3811a8c1f1c92f81 |
| ENCFF637TQK.tabix.bed.gz.tbi | 458.66 KB | cbff38a0953b47f409dc0f30d54e8f80 |
| ENCFF637TQK.tabix.bed.gz.tbi.dvc | 110.0 B | e99349362095ab781ebecf57c54a9a59 |
| genomic_resource.yaml | 2.49 KB | bbca152382ceeaf4be04d624c66054bc |
| genomic_resource_original.yaml | 2.42 KB | 2b6a606cd80d1688949641df8be99a1f |
| statistics/ |