Resource

Id ATAC-seq/ENCSR901IEQcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR901IEQ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR901IEQ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2016-10-12T15:51:41.222141+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR901IEQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR901IEQ float

ATAC-seq_ENCSR901IEQ
ATAC-seq ENCSR901IEQ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR901IEQ [1.83, 37.6]
n
38,849,815
mean
9.57
sd
4.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 388498151.21% 98848
chr1 3526020 1.42% 8870
chr2 3234511 1.34% 8352
chr3 2648881 1.34% 6810
chr4 1839668 0.97% 4785
chr5 2143404 1.18% 5574
chr6 2408889 1.41% 6165
chr7 2114835 1.33% 5403
chr8 1896272 1.31% 4935
chr9 1598862 1.16% 4087
chr10 1905858 1.42% 4902
chr11 1933190 1.43% 4964
chr12 1927784 1.45% 4944
chr13 954030 0.83% 2475
chr14 1237943 1.16% 3153
chr15 1196108 1.17% 2994
chr16 1264320 1.40% 3091
chr17 1558636 1.87% 3836
chr18 888126 1.11% 2308
chr19 1367180 2.33% 3057
chr20 997339 1.55% 2596
chr21 474491 1.02% 1184
chr22 585834 1.15% 1434
chrX 1147069 0.74% 2927
chrY 565 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98848 150 1925 393.03 333
global segment-length histogram

Files

Filename Size md5
ENCFF362ACP.bed.gz 3.0 MB bdc1663a93979f66d6129fb46db8f50e
ENCFF362ACP.tabix.bed.gz 1.06 MB 47b4b05c58811e60dd3c06601f1ff7e4
ENCFF362ACP.tabix.bed.gz.tbi 411.77 KB f10e5fc4512cd9a7a3bc8c203110b6e8
genomic_resource.yaml 1.58 KB b6db6c578882f4d49c0c824c8565bbcb
statistics/