ATAC-seq_ENCSR899YEP
ATAC-seq ENCSR899YEP [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)"]
×
| Id: | ATAC-seq/ENCSR899YEP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR899YEP [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN226HIW|/analyses/ENCAN226HIW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF771XJN|/files/ENCFF771XJN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81783. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF308AVB|/files/ENCFF308AVB/} (overlap peaks) and {ENCFF291YRH|/files/ENCFF291YRH/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 125472 and 58375 peaks. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR899YEP | float |
ATAC-seq_ENCSR899YEP |
ATAC-seq ENCSR899YEP [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)"]
|
|
[1.56, 34.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF308AVB.bed.gz | 3.11 MB | 3e76e5380b8bef8c9f4c24cb80dd1747 |
| ENCFF308AVB.bed.gz.dvc | 101.0 B | 44d52ad46e3fced262ea1e151dbacc38 |
| ENCFF308AVB.tabix.bed.gz | 997.68 KB | 4c097c0ab59405da4eb01e22b246abd1 |
| ENCFF308AVB.tabix.bed.gz.dvc | 107.0 B | f6e69bb82cb68169b10ca17ad77ec0bc |
| ENCFF308AVB.tabix.bed.gz.tbi | 386.79 KB | b351f863a8a67c9126f3e11b2b790144 |
| ENCFF308AVB.tabix.bed.gz.tbi.dvc | 110.0 B | 192c22d0318235de007420c70f600d91 |
| genomic_resource.yaml | 2.5 KB | e0c6c9e778fac40dddf408b1204491a5 |
| genomic_resource_original.yaml | 2.39 KB | efe16bf6ec2b1e91eaf4abc5c979fa14 |
| statistics/ |