ATAC-seq_ENCSR895SEG
ATAC-seq ENCSR895SEG [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (60 years)"]
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| Id: | ATAC-seq/ENCSR895SEG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR895SEG [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN251ASB|/analyses/ENCAN251ASB/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: According to ENCODE4 standards, overlap peaks files in ATAC-seq assays processed by the uniform processing pipeline should have FRiP (fraction of reads in called peak regions) scores > 0.3. FRiP scores 0.2-0.3 are acceptable, and < 0.2 are not compliant. {ENCFF537TOU|/files/ENCFF537TOU/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has a FRiP score of 0.18. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF346URV|/files/ENCFF346URV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.894495. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF346URV|/files/ENCFF346URV/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR895SEG | float |
ATAC-seq_ENCSR895SEG |
ATAC-seq ENCSR895SEG [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (60 years)"]
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[1.33, 31.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF537TOU.bed.gz | 5.38 MB | c828d9b160f00ce1f37e0d02da19f4a5 |
| ENCFF537TOU.bed.gz.dvc | 101.0 B | d73265458af5af36f1a47d322fb25078 |
| ENCFF537TOU.tabix.bed.gz | 1.54 MB | 7ef248a66c27351408e594c69ecbd7f7 |
| ENCFF537TOU.tabix.bed.gz.dvc | 107.0 B | 3e90689a83111fd760bbefd03fa6bb4b |
| ENCFF537TOU.tabix.bed.gz.tbi | 501.83 KB | 718c9273011575ba7ef78e7e54d3ed57 |
| ENCFF537TOU.tabix.bed.gz.tbi.dvc | 110.0 B | 04be51e15785b218e5cad4b17dcd88ae |
| genomic_resource.yaml | 3.37 KB | 25d77f85df3c7b75eb9df6a9766e4518 |
| genomic_resource_original.yaml | 3.26 KB | 420ce80fbda2a14023770f0fe7373e2a |
| statistics/ |