Resource
| Id | ATAC-seq/ENCSR868FGK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR868FGK [biosample_summary="Homo sapiens K562"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN824UKX|/analyses/ENCAN824UKX/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF534DCE|/files/ENCFF534DCE/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.889353. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR868FGK | float |
ATAC-seq_ENCSR868FGK |
ATAC-seq ENCSR868FGK [biosample_summary="Homo sapiens K562"]
|
 |
[1.35, 49.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99215586 | 3.08% | 161693 |
| chr1 | 11546384 | 4.64% | 18385 |
| chr2 | 7865159 | 3.25% | 13105 |
| chr3 | 6050604 | 3.05% | 9945 |
| chr4 | 4350586 | 2.29% | 7342 |
| chr5 | 4982354 | 2.74% | 8284 |
| chr6 | 6851829 | 4.01% | 11291 |
| chr7 | 6735503 | 4.23% | 10968 |
| chr8 | 4134801 | 2.85% | 6942 |
| chr9 | 3571029 | 2.58% | 5853 |
| chr10 | 4392084 | 3.28% | 7242 |
| chr11 | 5037989 | 3.73% | 7978 |
| chr12 | 4574537 | 3.43% | 7471 |
| chr13 | 1696909 | 1.48% | 2916 |
| chr14 | 2472182 | 2.31% | 4077 |
| chr15 | 3172281 | 3.11% | 5236 |
| chr16 | 3358535 | 3.72% | 5342 |
| chr17 | 4126252 | 4.96% | 6448 |
| chr18 | 1895361 | 2.36% | 3224 |
| chr19 | 3778334 | 6.45% | 5688 |
| chr20 | 2350626 | 3.65% | 3929 |
| chr21 | 1484190 | 3.18% | 2384 |
| chr22 | 2142891 | 4.22% | 3368 |
| chrX | 2642979 | 1.69% | 4269 |
| chrY | 2187 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 161693 | 150 | 4182 | 613.6 | 488 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF333TAT.bed.gz | 6.74 MB | 0f7a6c13e23c2e3fc8716153a89ed481 |
| ENCFF333TAT.tabix.bed.gz | 1.79 MB | 7ea5b1fb59ae1cf530f4616e86ae2518 |
| ENCFF333TAT.tabix.bed.gz.tbi | 459.7 KB | 1eaea5b4cfd57d56b336fcf2a6e5359e |
| genomic_resource.yaml | 1.82 KB | d233511e54bb6c0d280e39354269d2e1 |
| statistics/ |