ATAC-seq_ENCSR864ADD
ATAC-seq ENCSR864ADD [biosample_summary="Homo sapiens adrenal gland tissue female adult (41 years)"]
×
| Id: | ATAC-seq/ENCSR864ADD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR864ADD [biosample_summary="Homo sapiens adrenal gland tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN371EHF|/analyses/ENCAN371EHF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN371EHF|/analyses/ENCAN371EHF/} has in progress subobject document {9fc1813d-ccb0-49d6-88b1-ade27cb3237a|/documents/9fc1813d-ccb0-49d6-88b1-ade27cb3237a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF308ZMK|/files/ENCFF308ZMK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.883049. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF308ZMK|/files/ENCFF308ZMK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR864ADD | float |
ATAC-seq_ENCSR864ADD |
ATAC-seq ENCSR864ADD [biosample_summary="Homo sapiens adrenal gland tissue female adult (41 years)"]
|
|
[1.18, 39.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF590JRI.bed.gz | 5.58 MB | e86246136cafd4f97e52ca22c6b405e1 |
| ENCFF590JRI.bed.gz.dvc | 101.0 B | 41042a144a00a8f189c2080c0a5309cf |
| ENCFF590JRI.tabix.bed.gz | 1.52 MB | 9ee2d031b7ac25f588de2415183a58af |
| ENCFF590JRI.tabix.bed.gz.dvc | 107.0 B | abfe6553f281b86d67084246a722e6f5 |
| ENCFF590JRI.tabix.bed.gz.tbi | 483.01 KB | f493532582102f216274777bc47ffac8 |
| ENCFF590JRI.tabix.bed.gz.tbi.dvc | 110.0 B | 587b36f232d71da10c13c0ac21ceed3a |
| genomic_resource.yaml | 2.79 KB | e84d2cf9cb3e0b7b4afe6edcb68da6f3 |
| genomic_resource_original.yaml | 2.69 KB | 3684d1f31324cedcdb5814e488b9f349 |
| statistics/ |