Resource
| Id | ATAC-seq/ENCSR855BMI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR855BMI [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN395EJP|/analyses/ENCAN395EJP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN395EJP|/analyses/ENCAN395EJP/} has in progress subobject document {9c104b8d-279c-4d6d-a282-a778a7db161d|/documents/9c104b8d-279c-4d6d-a282-a778a7db161d/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF316HVA|/files/ENCFF316HVA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.84253. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF316HVA|/files/ENCFF316HVA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR855BMI | float |
ATAC-seq_ENCSR855BMI |
ATAC-seq ENCSR855BMI [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"]
|
 |
[1.38, 38.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64796594 | 2.01% | 128547 |
| chr1 | 6291807 | 2.53% | 12289 |
| chr2 | 5229767 | 2.16% | 10577 |
| chr3 | 4209318 | 2.12% | 8597 |
| chr4 | 2692187 | 1.42% | 5537 |
| chr5 | 3537953 | 1.95% | 7214 |
| chr6 | 3645025 | 2.13% | 7481 |
| chr7 | 3228761 | 2.03% | 6574 |
| chr8 | 2903625 | 2.00% | 5957 |
| chr9 | 2870934 | 2.07% | 5635 |
| chr10 | 3330507 | 2.49% | 6727 |
| chr11 | 3365727 | 2.49% | 6544 |
| chr12 | 3086483 | 2.32% | 6116 |
| chr13 | 1623140 | 1.42% | 3333 |
| chr14 | 1958445 | 1.83% | 3855 |
| chr15 | 2339580 | 2.29% | 4565 |
| chr16 | 2302023 | 2.55% | 4359 |
| chr17 | 3027245 | 3.64% | 5602 |
| chr18 | 1374852 | 1.71% | 2914 |
| chr19 | 2336663 | 3.99% | 4034 |
| chr20 | 1788884 | 2.78% | 3573 |
| chr21 | 835077 | 1.79% | 1651 |
| chr22 | 1456763 | 2.87% | 2761 |
| chrX | 1287999 | 0.83% | 2485 |
| chrY | 73829 | 0.13% | 167 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 128547 | 150 | 3196 | 504.07 | 409 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF119EAP.bed.gz | 4.73 MB | 87bb0652d107f59ac559b8286aa53ec6 |
| ENCFF119EAP.tabix.bed.gz | 1.4 MB | 8c8e655af9bda15b02c60c4e34585ad2 |
| ENCFF119EAP.tabix.bed.gz.tbi | 465.36 KB | b34d8b02fbb09fffb7f8d3f6511ee374 |
| genomic_resource.yaml | 2.85 KB | a8461c0460617ef4f5901d4d0ec76f0f |
| statistics/ |