ATAC-seq_ENCSR855BMI
ATAC-seq ENCSR855BMI [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"]
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| Id: | ATAC-seq/ENCSR855BMI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
ATAC-seq ENCSR855BMI [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN395EJP|/analyses/ENCAN395EJP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN395EJP|/analyses/ENCAN395EJP/} has in progress subobject document {9c104b8d-279c-4d6d-a282-a778a7db161d|/documents/9c104b8d-279c-4d6d-a282-a778a7db161d/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF316HVA|/files/ENCFF316HVA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.84253. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF316HVA|/files/ENCFF316HVA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR855BMI | float |
ATAC-seq_ENCSR855BMI |
ATAC-seq ENCSR855BMI [biosample_summary="Homo sapiens Right ventricle myocardium inferior tissue male adult (60 years)"]
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[1.38, 38.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF119EAP.bed.gz | 4.73 MB | 87bb0652d107f59ac559b8286aa53ec6 |
| ENCFF119EAP.bed.gz.dvc | 101.0 B | 7346947f37c6c1c15f1dd54de6358acf |
| ENCFF119EAP.tabix.bed.gz | 1.4 MB | 8c8e655af9bda15b02c60c4e34585ad2 |
| ENCFF119EAP.tabix.bed.gz.dvc | 107.0 B | 23b845c085050fb4aa4ea6423ef90322 |
| ENCFF119EAP.tabix.bed.gz.tbi | 465.36 KB | b34d8b02fbb09fffb7f8d3f6511ee374 |
| ENCFF119EAP.tabix.bed.gz.tbi.dvc | 110.0 B | 317928f7b6b015790081edc34078d8b9 |
| genomic_resource.yaml | 2.85 KB | a8461c0460617ef4f5901d4d0ec76f0f |
| genomic_resource_original.yaml | 2.73 KB | c8d529efaca1b3ae160faf320f1146f9 |
| statistics/ |