Resource

Id ATAC-seq/ENCSR854TTMcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR854TTM [biosample_summary="Homo sapiens natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"]
Description
Labels
  • accession: ENCSR854TTM
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000623/
  • biosample_summary: Homo sapiens natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours
  • date_created: 2021-07-14T20:31:41.341711+00:00
  • date_released: 2021-09-09
  • doi: 10.17989/ENCSR854TTM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR854TTM float

ATAC-seq_ENCSR854TTM
ATAC-seq ENCSR854TTM [biosample_summary="Homo sapiens natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR854TTM [1.37, 35.9]
n
53,974,843
mean
6.54
sd
4.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 539748431.68% 109106
chr1 5215033 2.09% 10427
chr2 4390405 1.81% 9137
chr3 3270845 1.65% 6685
chr4 2059245 1.08% 4238
chr5 2749216 1.51% 5668
chr6 3178427 1.86% 6472
chr7 2816280 1.77% 5785
chr8 2245296 1.55% 4646
chr9 2258145 1.63% 4561
chr10 2750390 2.06% 5747
chr11 2641007 1.96% 5303
chr12 2539432 1.91% 5033
chr13 1264986 1.11% 2654
chr14 1781676 1.66% 3589
chr15 1868851 1.83% 3832
chr16 2046053 2.26% 4020
chr17 2698670 3.24% 5171
chr18 1104858 1.37% 2366
chr19 2368358 4.04% 4319
chr20 1546654 2.40% 3200
chr21 744888 1.59% 1520
chr22 1247338 2.45% 2458
chrX 1138330 0.73% 2164
chrY 50460 0.09% 111
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109106 150 2792 494.7 397
global segment-length histogram

Files

Filename Size md5
ENCFF986KHO.bed.gz 3.86 MB fd0fbe4dac055c21f6d1936820ce20d6
ENCFF986KHO.tabix.bed.gz 1.18 MB 12398864aeab1268d421786829a77513
ENCFF986KHO.tabix.bed.gz.tbi 442.66 KB 28bb9322ea5ed7b56b09ab3d64fd955a
genomic_resource.yaml 2.4 KB 4c1da2d43baaf87bd53824d9bf5f19bd
statistics/