Resource
| Id | ATAC-seq/ENCSR848TMJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
ATAC-seq ENCSR848TMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)"]
|
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN325MSC|/analyses/ENCAN325MSC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF704VYQ|/files/ENCFF704VYQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.651195. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF704VYQ|/files/ENCFF704VYQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.71. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| ATAC-seq_ENCSR848TMJ | float |
ATAC-seq_ENCSR848TMJ |
ATAC-seq ENCSR848TMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)"]
|
 |
[1.32, 38.2] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF067XXJ.bed.gz | 4.01 MB | b4a0881d45ef125a6d4939a0cb89cbaf |
| ENCFF067XXJ.bed.gz.dvc | 101.0 B | 24816dbf785e9d7800b7acc101defcd9 |
| ENCFF067XXJ.tabix.bed.gz | 1.16 MB | d53834b6d420e664e4f739ba5ded654d |
| ENCFF067XXJ.tabix.bed.gz.dvc | 107.0 B | ba7c7cc959ce92a2d7f7964d066520cc |
| ENCFF067XXJ.tabix.bed.gz.tbi | 417.0 KB | 408f5620ffb90f56612856c92bbb1842 |
| ENCFF067XXJ.tabix.bed.gz.tbi.dvc | 110.0 B | a8a9b217b403d50d56f21f85f63813e8 |
| genomic_resource.yaml | 2.79 KB | 59a813e31df5c7c1fa8b17d0012c7c05 |
| statistics/ |