Resource
| Id | ATAC-seq/ENCSR848TMJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR848TMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN325MSC|/analyses/ENCAN325MSC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF704VYQ|/files/ENCFF704VYQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.651195. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF704VYQ|/files/ENCFF704VYQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.71. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR848TMJ | float |
ATAC-seq_ENCSR848TMJ |
ATAC-seq ENCSR848TMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)"]
|
 |
[1.32, 38.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53626992 | 1.67% | 106002 |
| chr1 | 5289100 | 2.12% | 10312 |
| chr2 | 4172892 | 1.72% | 8451 |
| chr3 | 3466529 | 1.75% | 7029 |
| chr4 | 2246164 | 1.18% | 4643 |
| chr5 | 2838637 | 1.56% | 5756 |
| chr6 | 2942865 | 1.72% | 5943 |
| chr7 | 2673198 | 1.68% | 5417 |
| chr8 | 2297619 | 1.58% | 4672 |
| chr9 | 2280865 | 1.65% | 4433 |
| chr10 | 2727140 | 2.04% | 5535 |
| chr11 | 2840847 | 2.10% | 5485 |
| chr12 | 2555068 | 1.92% | 4965 |
| chr13 | 1301974 | 1.14% | 2673 |
| chr14 | 1615479 | 1.51% | 3182 |
| chr15 | 1928527 | 1.89% | 3831 |
| chr16 | 1972446 | 2.18% | 3783 |
| chr17 | 2636010 | 3.17% | 4915 |
| chr18 | 1134710 | 1.41% | 2414 |
| chr19 | 2159153 | 3.68% | 3729 |
| chr20 | 1461558 | 2.27% | 2913 |
| chr21 | 667215 | 1.43% | 1322 |
| chr22 | 1235835 | 2.43% | 2353 |
| chrX | 1124749 | 0.72% | 2106 |
| chrY | 58412 | 0.10% | 140 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106002 | 150 | 2850 | 505.91 | 410 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF067XXJ.bed.gz | 4.01 MB | b4a0881d45ef125a6d4939a0cb89cbaf |
| ENCFF067XXJ.tabix.bed.gz | 1.16 MB | d53834b6d420e664e4f739ba5ded654d |
| ENCFF067XXJ.tabix.bed.gz.tbi | 417.0 KB | 408f5620ffb90f56612856c92bbb1842 |
| genomic_resource.yaml | 2.79 KB | 59a813e31df5c7c1fa8b17d0012c7c05 |
| statistics/ |