Resource

Id ATAC-seq/ENCSR846ZBXcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR846ZBX [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR846ZBX
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (51 years)
  • date_created: 2016-04-26T18:51:40.841584+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR846ZBX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR846ZBX float

ATAC-seq_ENCSR846ZBX
ATAC-seq ENCSR846ZBX [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR846ZBX [1.42, 27.3]
n
45,258,614
mean
5.04
sd
2.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 452586141.41% 72233
chr1 4604541 1.85% 7280
chr2 3514462 1.45% 5735
chr3 2717240 1.37% 4429
chr4 1795756 0.94% 2949
chr5 2244576 1.24% 3719
chr6 2572390 1.51% 4124
chr7 2191096 1.38% 3541
chr8 1894645 1.31% 3127
chr9 1916213 1.38% 3050
chr10 2134436 1.60% 3523
chr11 2472214 1.83% 3870
chr12 2146667 1.61% 3399
chr13 959559 0.84% 1558
chr14 1452517 1.36% 2291
chr15 1550679 1.52% 2480
chr16 1680111 1.86% 2585
chr17 2367704 2.84% 3593
chr18 916994 1.14% 1538
chr19 2029927 3.46% 2926
chr20 1278470 1.98% 2079
chr21 663067 1.42% 1051
chr22 1073893 2.11% 1681
chrX 1080147 0.69% 1700
chrY 1310 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72233 150 2951 626.56 528
global segment-length histogram

Files

Filename Size md5
ENCFF494FRQ.bed.gz 3.15 MB 2d9c291db7f9b25b9c84703ea6c2b71f
ENCFF494FRQ.tabix.bed.gz 831.26 KB 885503e834bdf878b198b2a69516ae70
ENCFF494FRQ.tabix.bed.gz.tbi 355.8 KB 206d48e9b07b1950e4deb0716784bc8f
genomic_resource.yaml 1.64 KB 3633d03e6657c19bef4f61055f8f88ce
statistics/