type: position_score
table:
  filename: ENCFF085ASE.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR846VPV
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR846VPV [TISSUE: Homo sapiens heart left ventricle tissue
    female adult (66 years)]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (66 years)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN380SYM|/analyses/ENCAN380SYM/}
    has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}


    **audit\_internal\_action**: Released analysis {ENCAN380SYM|/analyses/ENCAN380SYM/}
    has in progress subobject document {1ffc1b32-5e74-41f8-9011-363a45567cd6|/documents/1ffc1b32-5e74-41f8-9011-363a45567cd6/}


    **audit\_not\_compliant**: Alignment file {ENCFF456PVX|/files/ENCFF456PVX/} processed
    by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 17070881 usable fragments. According
    to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline
    should have > 25 million usable fragments. 20-25 million is acceptable and < 15
    million is not compliant.


    **audit\_warning**: NRF (Non Redundant Fraction) is equal to the result of the
    division of the number of reads after duplicates removal by the total number of
    reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate
    complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but >
    0.7 is acceptable. ENCODE processed file {ENCFF456PVX|/files/ENCFF456PVX/} processed
    by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF
    value of 0.881.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR846VPV
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: female adult (66 years)
    biosample_summary: Homo sapiens heart left ventricle tissue female adult (66 years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0002084/
    perturbed: false
    doi: 10.17989/ENCSR846VPV
    date_created: '2019-07-30T07:13:06.846494+00:00'
    date_released: '2020-08-17'
    submitter_comment: ''
